myRT

myRT report for GCA_001895305.1_ASM189530v1

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Seq: CP017762.1 Virgibacillus sp. 6R chromosome, complete genome (4749385 bp)
Overview 1 RT 1: 318574-324344 bp 2 RT 2: 567910-575985 bp 3 RT 3: 1711646-1716689 bp 4 RT 4: 2245172-2250802 bp 5 RT 5: 2681971-2685666 bp 6 RT 6: 2740479-2748631 bp 7 RT 7: 3370916-3377465 bp 8 RT 8: 3435750-3440704 bp 9 RT 9: 3871308-3876504 bp 10 RT 10: 4401206-4407744 bp Neighborhood of RT #1 [318574, 324352] Spore_YhcN_YlaJ nadE RVT-GII GIIM spore_safA PRK11898 Neighborhood of RT #2 [567910, 576284] Endonuclea_NS_2 DUF4064 RVT-GII GIIM MrcB Acetyltransf_1 Neighborhood of RT #3 [1711646, 1716691] PTS_IIA CelA RVT-GII GIIM GlcN6P_deaminase PRK13508 Neighborhood of RT #4 [2245172, 2250828] fabG TetR_N TetR_C_8 RVT-GII AraC AraC_E_bind PRK10200 Neighborhood of RT #5 [2681971, 2685666] RVT-GII group_II_RT_mat Neighborhood of RT #6 [2740479, 2749097] OmpR HK_WalK HK_WalK RVT-GII GIIM AcrB HTH_TipAL-Mta Neighborhood of RT #7 [3370916, 3377465] YdjC_EF3048_like PTS-II-BC-nag RVT-GII GIIM RpoE Neighborhood of RT #8 [3435750, 3440709] HTH_28 HTH_28 HTH_28 RVT-GII rpsN YejR Neighborhood of RT #9 [3871308, 3877282] Sulf_transp DUF308 RVT-Retrons DUF820 DUF4372 Neighborhood of RT #10 [4401206, 4407746] FtsA PRK09330 RVT-GII GIIM spore_II_GA spore_sigmaE Feature: gene Location: 318574-319131 bp Ori: API90658.1 Feature: domain Description: Spore_YhcN_YlaJ Location: 318670-319123 bp Feature: domain Description: Spore_YhcN_YlaJ Location: 31 8670-31 91 23 bp Feature: gene Location: 319202-319945 bp Ori: API94113.1 Feature: domain Description: nadE Location: 319208-319925 bp Feature: domain Description: nadE Location: 31 9208-31 9925 bp Feature: gene Location: 320380-321768 bp Ori: API90659.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320701-321316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320701 -321 31 6 bp Feature: domain Description: GIIM Note: maturase Location: 321379-321589 bp Feature: domain Description: GIIM Note: maturase Location: 321 379-321 589 bp Feature: gene Location: 322241-323209 bp Ori: API90660.1 Feature: domain Description: spore_safA Location: 322265-322391 bp Feature: domain Description: spore_safA Location: 322265-322391 bp Feature: gene Location: 323495-324352 bp Ori: API90661.1 Feature: domain Description: PRK11898 Location: 323507-324344 bp Feature: domain Description: PRK1 1 898 Location: 323507-324344 bp Feature: gene Location: 567910-568101 bp Ori: API90858.1 Feature: domain Description: Endonuclea_NS_2 Location: 567949-568045 bp Feature: domain Description: Endonuclea_NS_2 Location: 567949-568045 bp Feature: gene Location: 568542-568979 bp Ori: API90859.1 Feature: domain Description: DUF4064 Location: 568554-568887 bp Feature: domain Description: DUF4064 Location: 568554-568887 bp Feature: gene Location: 570042-571430 bp Ori: API90860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570363-570978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570363-570978 bp Feature: domain Description: GIIM Note: maturase Location: 571041-571251 bp Feature: domain Description: GIIM Note: maturase Location: 571 041 -571 251 bp Feature: gene Location: 572238-575309 bp Ori: API90861.1 Feature: domain Description: MrcB Location: 572394-575277 bp Feature: domain Description: MrcB Location: 572394-575277 bp Feature: gene Location: 575631-576284 bp Ori: API90862.1 Feature: domain Description: Acetyltransf_1 Location: 575760-575985 bp Feature: domain Description: Acetyltransf_1 Location: 575760-575985 bp Feature: gene Location: 1711646-1711972 bp Ori: API91724.1 Feature: domain Description: PTS_IIA Location: 1711682-1711958 bp Feature: domain Description: PTS_IIA Location: 1 71 1 682-1 71 1 958 bp Feature: gene Location: 1711975-1712292 bp Ori: API91725.1 Feature: domain Description: CelA Location: 1711984-1712266 bp Feature: domain Description: CelA Location: 1 71 1 984-1 71 2266 bp Feature: gene Location: 1712545-1713933 bp Ori: API91726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712866-1713481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 2866-1 71 3481 bp Feature: domain Description: GIIM Note: maturase Location: 1713544-1713754 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 3544-1 71 3754 bp Feature: gene Location: 1714636-1714854 bp Ori: API91727.1 Feature: domain Description: GlcN6P_deaminase Location: 1714639-1714825 bp Feature: domain Description: GlcN6P_deaminase Location: 1 71 4639-1 71 4825 bp Feature: gene Location: 1715762-1716691 bp Ori: API91728.1 Feature: domain Description: PRK13508 Location: 1715765-1716689 bp Feature: domain Description: PRK1 3508 Location: 1 71 5765-1 71 6689 bp Feature: gene Location: 2245172-2245933 bp Ori: API92127.1 Feature: domain Description: fabG Location: 2245178-2245922 bp Feature: domain Description: fabG Location: 22451 78-2245922 bp Feature: gene Location: 2246159-2246776 bp Ori: API92128.1 Feature: domain Description: TetR_N Location: 2246216-2246339 bp Feature: domain Description: TetR_N Location: 224621 6-2246339 bp Feature: domain Description: TetR_C_8 Location: 2246420-2246708 bp Feature: domain Description: TetR_C_8 Location: 2246420-2246708 bp Feature: gene Location: 2246843-2247941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247164-2247404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22471 64-2247404 bp Feature: gene Location: 2248990-2249835 bp Ori: API92129.1 Feature: domain Description: AraC Location: 2249017-2249308 bp Feature: domain Description: AraC Location: 224901 7-2249308 bp Feature: domain Description: AraC_E_bind Location: 2249377-2249824 bp Feature: domain Description: AraC_E_bind Location: 2249377-2249824 bp Feature: gene Location: 2250145-2250828 bp Ori: API94230.1 Feature: domain Description: PRK10200 Location: 2250148-2250802 bp Feature: domain Description: PRK1 0200 Location: 22501 48-2250802 bp Feature: gene Location: 2681971-2682435 bp Feature: gene Location: 2682459-2682935 bp Feature: gene Location: 2683452-2684681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2683623-2683707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2683623-2683707 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2684262-2684478 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2684262-2684478 bp Feature: gene Location: 2685029-2685361 bp Feature: gene Location: 2685358-2685666 bp Feature: gene Location: 2740479-2741153 bp Ori: API92513.1 Feature: domain Description: OmpR Location: 2740488-2741148 bp Feature: domain Description: OmpR Location: 2740488-2741 1 48 bp Feature: gene Location: 2741150-2742505 bp Ori: API92514.1 Feature: domain Description: HK_WalK Location: 2741603-2741813 bp Feature: domain Description: HK_WalK Location: 2741 603-2741 81 3 bp Feature: domain Description: HK_WalK Location: 2741813-2742485 bp Feature: domain Description: HK_WalK Location: 2741 81 3-2742485 bp Feature: gene Location: 2743212-2744600 bp Ori: API92515.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2743533-2744148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2743533-27441 48 bp Feature: domain Description: GIIM Note: maturase Location: 2744211-2744421 bp Feature: domain Description: GIIM Note: maturase Location: 274421 1 -2744421 bp Feature: gene Location: 2744773-2747823 bp Ori: API92516.1 Feature: domain Description: AcrB Location: 2744785-2747785 bp Feature: domain Description: AcrB Location: 2744785-2747785 bp Feature: gene Location: 2748343-2749097 bp Feature: domain Description: HTH_TipAL-Mta Location: 2748352-2748631 bp Feature: domain Description: HTH_TipAL-Mta Location: 2748352-2748631 bp Feature: gene Location: 3370916-3371659 bp Ori: API93013.1 Feature: domain Description: YdjC_EF3048_like Location: 3370925-3371597 bp Feature: domain Description: YdjC_EF3048_like Location: 3370925-3371 597 bp Feature: gene Location: 3371664-3373067 bp Ori: API93014.1 Feature: domain Description: PTS-II-BC-nag Location: 3371667-3373047 bp Feature: domain Description: PTS-II-BC-nag Location: 3371 667-3373047 bp Feature: gene Location: 3373562-3374950 bp Ori: API93015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373883-3374498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373883-3374498 bp Feature: domain Description: GIIM Note: maturase Location: 3374561-3374771 bp Feature: domain Description: GIIM Note: maturase Location: 3374561 -3374771 bp Feature: gene Location: 3376162-3376710 bp Ori: API94301.1 Feature: domain Description: RpoE Location: 3376198-3376705 bp Feature: domain Description: RpoE Location: 33761 98-3376705 bp Feature: gene Location: 3376707-3377465 bp Feature: gene Location: 3435750-3436596 bp Feature: gene Location: 3436767-3437249 bp Ori: API93059.1 Feature: domain Description: HTH_28 Location: 3436776-3436887 bp Feature: domain Description: HTH_28 Location: 3436776-3436887 bp Feature: domain Description: HTH_28 Location: 3436908-3437022 bp Feature: domain Description: HTH_28 Location: 3436908-3437022 bp Feature: domain Description: HTH_28 Location: 3437094-3437244 bp Feature: domain Description: HTH_28 Location: 3437094-3437244 bp Feature: gene Location: 3437958-3438458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438156-3438459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34381 56-3438459 bp Feature: gene Location: 3439353-3439622 bp Ori: API93060.1 Feature: domain Description: rpsN Location: 3439356-3439620 bp Feature: domain Description: rpsN Location: 3439356-3439620 bp Feature: gene Location: 3439744-3440709 bp Ori: API93061.1 Feature: domain Description: YejR Location: 3439765-3440704 bp Feature: domain Description: YejR Location: 3439765-3440704 bp Feature: gene Location: 3871308-3872627 bp Ori: API93386.1 Feature: domain Description: Sulf_transp Location: 3871494-3872568 bp Feature: domain Description: Sulf_transp Location: 3871 494-3872568 bp Feature: gene Location: 3873352-3873531 bp Ori: API93387.1 Feature: domain Description: DUF308 Location: 3873370-3873526 bp Feature: domain Description: DUF308 Location: 3873370-3873526 bp Feature: gene Location: 3874305-3874736 bp Ori: API93388.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3874311-3874506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 387431 1 -3874506 bp Feature: gene Location: 3874727-3875293 bp Ori: API93389.1 Feature: domain Description: DUF820 Location: 3874802-3875267 bp Feature: domain Description: DUF820 Location: 3874802-3875267 bp Feature: gene Location: 3876306-3877282 bp Feature: domain Description: DUF4372 Location: 3876324-3876504 bp Feature: domain Description: DUF4372 Location: 3876324-3876504 bp Feature: gene Location: 4401206-4402486 bp Ori: API93801.1 Feature: domain Description: FtsA Location: 4401215-4402448 bp Feature: domain Description: FtsA Location: 4401 21 5-4402448 bp Feature: gene Location: 4402599-4403750 bp Ori: API93802.1 Feature: domain Description: PRK09330 Location: 4402605-4403733 bp Feature: domain Description: PRK09330 Location: 4402605-4403733 bp Feature: gene Location: 4404254-4405642 bp Ori: API93803.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404575-4405190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404575-44051 90 bp Feature: domain Description: GIIM Note: maturase Location: 4405253-4405463 bp Feature: domain Description: GIIM Note: maturase Location: 4405253-4405463 bp Feature: gene Location: 4406091-4407011 bp Ori: API93804.1 Feature: domain Description: spore_II_GA Location: 4406094-4406985 bp Feature: domain Description: spore_II_GA Location: 4406094-4406985 bp Feature: gene Location: 4407027-4407746 bp Ori: API93805.1 Feature: domain Description: spore_sigmaE Location: 4407051-4407744 bp Feature: domain Description: spore_sigmaE Location: 4407051 -4407744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spore_YhcN_YlaJ (pfam09580), nadE (TIGR00552), RVT-GII, GIIM (pfam08388), spore_safA (TIGR02899), PRK11898 (prephenate dehydratase; Provisional), Endonuclea_NS_2 (pfam13930), DUF4064 (pfam13273), MrcB (COG0744), Acetyltransf_1 (pfam00583)
PTS_IIA (pfam02255), CelA (TIGR03030), GlcN6P_deaminase (cd01399), PRK13508 (tagatose-6-phosphate kinase; Provisional), fabG (PRK12825), TetR_N (pfam00440), TetR_C_8 (pfam14278), AraC (COG2207), AraC_E_bind (smart00871), PRK10200 (putative racemase; Provisional)
group_II_RT_mat (TIGR04416), OmpR (COG0745), HK_WalK (NF033092), AcrB (COG0841), HTH_TipAL-Mta (cd01106), YdjC_EF3048_like (cd10803), PTS-II-BC-nag (TIGR01998), RpoE (COG3343), HTH_28 (pfam13518), rpsN (PRK08881)
YejR (COG0523), Sulf_transp (pfam04143), DUF308 (pfam03729), RVT-Retrons, DUF820, DUF4372 (pfam14294), FtsA (smart00842), PRK09330 (cell division protein FtsZ; Validated), spore_II_GA (TIGR02854), spore_sigmaE (TIGR02835)