myRT

myRT report for GCA_001895905.1_ASM189590v1

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Seq: CP018071.1 Enterococcus faecium strain VRE001, complete genome (2933966 bp)
Overview 1 RT 1: 538332-552680 bp 2 RT 2: 2375411-2382865 bp 3 RT 3: 2562554-2574534 bp Neighborhood of RT #1 [538332, 552721] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA PHP_HisPPase SMC_prok_B SMC_prok_B TcpE AAA_10 RVT-GII AAA_10 Transposase_mut Neighborhood of RT #2 [2375411, 2382945] AAA_10 RVT-GII TcpE Neighborhood of RT #3 [2562554, 2574539] TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK Feature: gene Location: 538332-539516 bp Ori: APJ05881.1 Feature: domain Description: HTH_XRE Location: 538362-538506 bp Feature: domain Description: HTH_XRE Location: 538362-538506 bp Feature: domain Description: Rol_Rep_N Location: 538539-538803 bp Feature: domain Description: Rol_Rep_N Location: 538539-538803 bp Feature: domain Description: Rep_trans Location: 538827-539439 bp Feature: domain Description: Rep_trans Location: 538827-539439 bp Feature: gene Location: 539531-539650 bp Ori: APJ05882.1 Feature: domain Description: DUF3789 Location: 539540-539633 bp Feature: domain Description: DUF3789 Location: 539540-539633 bp Feature: gene Location: 540396-542306 bp Ori: APJ05883.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540729-541467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540729-541 467 bp Feature: domain Description: HNHc Note: nucleases Location: 542022-542187 bp Feature: domain Description: HNHc Note: nucleases Location: 542022-5421 87 bp Feature: gene Location: 542647-543147 bp Ori: APJ05884.1 Feature: domain Description: ArdA Location: 542665-543136 bp Feature: domain Description: ArdA Location: 542665-5431 36 bp Feature: gene Location: 543244-545091 bp Ori: APJ05885.1 Feature: domain Description: PHP_HisPPase Location: 543271-543748 bp Feature: domain Description: PHP_HisPPase Location: 543271 -543748 bp Feature: domain Description: SMC_prok_B Location: 544150-544249 bp Feature: domain Description: SMC_prok_B Location: 5441 50-544249 bp Feature: domain Description: SMC_prok_B Location: 544579-545014 bp Feature: domain Description: SMC_prok_B Location: 544579-54501 4 bp Feature: gene Location: 546040-546429 bp Ori: APJ05887.1 Feature: domain Description: TcpE Location: 546058-546358 bp Feature: domain Description: TcpE Location: 546058-546358 bp Feature: gene Location: 546416-547963 bp Feature: domain Description: AAA_10 Location: 547745-547928 bp Feature: domain Description: AAA_1 0 Location: 547745-547928 bp Feature: gene Location: 548663-550489 bp Ori: APJ05888.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548963-549662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548963-549662 bp Feature: gene Location: 550602-551441 bp Feature: domain Description: AAA_10 Location: 550608-551427 bp Feature: domain Description: AAA_1 0 Location: 550608-551 427 bp Feature: gene Location: 551534-552721 bp Ori: APJ05889.1 Feature: domain Description: Transposase_mut Location: 551537-552680 bp Feature: domain Description: Transposase_mut Location: 551 537-552680 bp Feature: gene Location: 2375411-2377437 bp Feature: gene Location: 2377434-2378378 bp Feature: domain Description: AAA_10 Location: 2377440-2378340 bp Feature: domain Description: AAA_1 0 Location: 2377440-2378340 bp Feature: gene Location: 2378491-2380317 bp Ori: APJ07550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378791-2379490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378791 -2379490 bp Feature: gene Location: 2381017-2382566 bp Feature: gene Location: 2382550-2382945 bp Ori: APJ07551.1 Feature: domain Description: TcpE Location: 2382568-2382865 bp Feature: domain Description: TcpE Location: 2382568-2382865 bp Feature: gene Location: 2562554-2562943 bp Ori: APJ07690.1 Feature: domain Description: TcpE Location: 2562572-2562872 bp Feature: domain Description: TcpE Location: 2562572-2562872 bp Feature: gene Location: 2563003-2563506 bp Ori: APJ07691.1 Feature: domain Description: ArdA Location: 2563021-2563492 bp Feature: domain Description: ArdA Location: 2563021 -2563492 bp Feature: gene Location: 2563847-2565757 bp Ori: APJ07692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2564180-2564918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25641 80-256491 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2565473-2565638 bp Feature: domain Description: HNHc Note: nucleases Location: 2565473-2565638 bp Feature: gene Location: 2566503-2566622 bp Ori: APJ07693.1 Feature: domain Description: DUF3789 Location: 2566512-2566605 bp Feature: domain Description: DUF3789 Location: 256651 2-2566605 bp Feature: gene Location: 2566637-2567821 bp Ori: APJ07694.1 Feature: domain Description: HTH_XRE Location: 2566667-2566811 bp Feature: domain Description: HTH_XRE Location: 2566667-256681 1 bp Feature: domain Description: Rol_Rep_N Location: 2566844-2567108 bp Feature: domain Description: Rol_Rep_N Location: 2566844-25671 08 bp Feature: domain Description: Rep_trans Location: 2567132-2567744 bp Feature: domain Description: Rep_trans Location: 25671 32-2567744 bp Feature: gene Location: 2569735-2570409 bp Ori: APJ07697.1 Feature: domain Description: Zeta_toxin Location: 2569834-2570317 bp Feature: domain Description: Zeta_toxin Location: 2569834-257031 7 bp Feature: gene Location: 2570487-2570726 bp Feature: gene Location: 2570820-2572679 bp Ori: APJ07699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2571129-2571870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2571 1 29-2571 870 bp Feature: domain Description: HNHc Note: nucleases Location: 2572425-2572563 bp Feature: domain Description: HNHc Note: nucleases Location: 2572425-2572563 bp Feature: gene Location: 2572798-2573028 bp Feature: gene Location: 2573412-2574539 bp Feature: domain Description: FtsK Location: 2574072-2574534 bp Feature: domain Description: FtsK Location: 2574072-2574534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275), PHP_HisPPase (cd07432), SMC_prok_B (TIGR02168), TcpE (pfam12648)
AAA_10 (pfam12846), Transposase_mut (pfam00872), Zeta_toxin (pfam06414), FtsK (COG1674)