myRT

myRT report for GCA_001900535.1_ASM190053v1

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Seq: CP010122.1 Escherichia coli strain C5, complete genome (5333488 bp)
Overview 1 RT 1: 2219071-2227705 bp Neighborhood of RT #1 [2219071, 2227719] XRE RVT-Retrons SR_Res_par HTH_38 FRG RVT-UG7 LprI Feature: gene Location: 2219071-2219259 bp Feature: gene Location: 2219449-2219745 bp Ori: APJ79734.1 Feature: domain Description: XRE Location: 2219458-2219641 bp Feature: domain Description: XRE Location: 221 9458-221 9641 bp Feature: gene Location: 2219735-2220685 bp Ori: APJ76782.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2219915-2220446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 221 991 5-2220446 bp Feature: gene Location: 2220782-2222179 bp Feature: gene Location: 2222708-2223319 bp Ori: APJ76784.1 Feature: domain Description: SR_Res_par Location: 2222723-2223155 bp Feature: domain Description: SR_Res_par Location: 2222723-22231 55 bp Feature: domain Description: HTH_38 Location: 2223218-2223311 bp Feature: domain Description: HTH_38 Location: 222321 8-222331 1 bp Feature: gene Location: 2223639-2224463 bp Ori: APJ76785.1 Feature: domain Description: FRG Location: 2223747-2224041 bp Feature: domain Description: FRG Location: 2223747-2224041 bp Feature: gene Location: 2224625-2226139 bp Ori: APJ76786.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2224997-2225420 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2224997-2225420 bp Feature: gene Location: 2226552-2226884 bp Feature: gene Location: 2226889-2227719 bp Ori: APJ76788.1 Feature: domain Description: LprI Location: 2227510-2227705 bp Feature: domain Description: LprI Location: 222751 0-2227705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), RVT-Retrons, SR_Res_par (cd03767), HTH_38 (pfam13936), FRG (smart00901), RVT-UG7, LprI (pfam07007)

Seq: CP010124.1 Escherichia coli strain C5 plasmid B, complete genome (86032 bp)
Overview 1 RT 1: 3658-8128 bp Neighborhood of RT #1 [3658, 8128] HTH_23 InsE PRK09738 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3658-4308 bp Ori: APJ80114.1 Feature: domain Description: HTH_23 Location: 3709-3808 bp Feature: domain Description: HTH_2 3 Location: 3709-3808 bp Feature: domain Description: InsE Location: 3931-4285 bp Feature: domain Description: InsE Location: 3931-42 85 bp Feature: gene Location: 4741-4920 bp Ori: APJ80115.1 Feature: domain Description: PRK09738 Location: 4744-4897 bp Feature: domain Description: PRK09738 Location: 4744-4897 bp Feature: gene Location: 5476-7164 bp Ori: APJ80116.1 Feature: domain Description: RVT_N Location: 5536-5779 bp Feature: domain Description: RVT_N Location: 5536-5779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5824-6466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582 4-6466 bp Feature: domain Description: GIIM Note: maturase Location: 6520-6751 bp Feature: domain Description: GIIM Note: maturase Location: 652 0-6751 bp Feature: domain Description: HNHc Note: nucleases Location: 6964-7126 bp Feature: domain Description: HNHc Note: nucleases Location: 6964-712 6 bp Feature: gene Location: 7507-7809 bp Feature: gene Location: 7922-8128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)