myRT

myRT report for GCA_001900775.1_ASM190077v1

Download annotations/find similar RTs

Seq: CP010160.1 Escherichia coli strain H1, complete genome (4818512 bp)
Overview 1 RT 1: 436812-442356 bp 2 RT 2: 1240649-1245318 bp 3 RT 3: 2983130-2987277 bp 4 RT 4: 3449096-3455204 bp Neighborhood of RT #1 [436812, 442356] PHA02517 RVT-GII GIIM Neighborhood of RT #2 [1240649, 1245323] AAA_15 AAA_15 Dam RVT-Retrons DDE_Tnp_IS1 PRK11198 Neighborhood of RT #3 [2983130, 2987339] Tra5 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3449096, 3455215] InsE IS285 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 436812-437231 bp Ori: APK47130.1 Feature: domain Description: PHA02517 Location: 436827-437166 bp Feature: domain Description: PHA0251 7 Location: 436827-4371 66 bp Feature: gene Location: 437444-437869 bp Feature: gene Location: 437838-439346 bp Ori: APK47132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438096-438828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438096-438828 bp Feature: domain Description: GIIM Note: maturase Location: 438903-439101 bp Feature: domain Description: GIIM Note: maturase Location: 438903-4391 01 bp Feature: gene Location: 439487-440719 bp Feature: gene Location: 441226-442356 bp Feature: gene Location: 1240649-1242382 bp Ori: APK51106.1 Feature: domain Description: AAA_15 Location: 1240670-1240871 bp Feature: domain Description: AAA_1 5 Location: 1 240670-1 240871 bp Feature: domain Description: AAA_15 Location: 1241228-1241534 bp Feature: domain Description: AAA_1 5 Location: 1 241 228-1 241 534 bp Feature: gene Location: 1242462-1243361 bp Ori: APK47851.1 Feature: domain Description: Dam Location: 1242477-1243236 bp Feature: domain Description: Dam Location: 1 242477-1 243236 bp Feature: gene Location: 1243575-1243874 bp Ori: APK47852.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1243578-1243698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 243578-1 243698 bp Feature: gene Location: 1244371-1244874 bp Ori: APK47853.1 Feature: domain Description: DDE_Tnp_IS1 Location: 1244482-1244872 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 244482-1 244872 bp Feature: gene Location: 1244871-1245323 bp Ori: APK47854.1 Feature: domain Description: PRK11198 Location: 1244892-1245318 bp Feature: domain Description: PRK1 1 1 98 Location: 1 244892-1 24531 8 bp Feature: gene Location: 2983130-2984056 bp Feature: gene Location: 2984202-2984621 bp Ori: APK49400.1 Feature: domain Description: Tra5 Location: 2984205-2984616 bp Feature: domain Description: Tra5 Location: 2984205-298461 6 bp Feature: gene Location: 2984745-2986253 bp Ori: APK51170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985003-2985735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985003-2985735 bp Feature: domain Description: GIIM Note: maturase Location: 2985810-2986008 bp Feature: domain Description: GIIM Note: maturase Location: 298581 0-2986008 bp Feature: gene Location: 2986562-2986933 bp Feature: gene Location: 2986860-2987339 bp Ori: APK49402.1 Feature: domain Description: PHA02517 Location: 2986926-2987277 bp Feature: domain Description: PHA0251 7 Location: 2986926-2987277 bp Feature: gene Location: 3449096-3449359 bp Ori: APK49836.1 Feature: domain Description: InsE Location: 3449111-3449264 bp Feature: domain Description: InsE Location: 34491 1 1 -3449264 bp Feature: gene Location: 3449686-3450984 bp Ori: APK49837.1 Feature: domain Description: IS285 Location: 3449716-3450874 bp Feature: domain Description: IS285 Location: 344971 6-3450874 bp Feature: gene Location: 3451452-3452960 bp Ori: APK51192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3451710-3452442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3451 71 0-3452442 bp Feature: domain Description: GIIM Note: maturase Location: 3452517-3452715 bp Feature: domain Description: GIIM Note: maturase Location: 345251 7-345271 5 bp Feature: gene Location: 3453567-3453992 bp Ori: APK51193.1 Feature: domain Description: PHA02517 Location: 3453591-3453927 bp Feature: domain Description: PHA0251 7 Location: 3453591 -3453927 bp Feature: gene Location: 3454064-3455215 bp Ori: APK49838.1 Feature: domain Description: HTH_38 Location: 3454073-3454187 bp Feature: domain Description: HTH_38 Location: 3454073-34541 87 bp Feature: domain Description: Tra8 Location: 3454223-3455204 bp Feature: domain Description: Tra8 Location: 3454223-3455204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), AAA_15 (pfam13175), Dam (pfam05869), RVT-Retrons, DDE_Tnp_IS1 (pfam03400), PRK11198 (LysM domain/BON superfamily protein; Provisional), Tra5 (COG2801), InsE (COG2963)
IS285 (COG3328), HTH_38 (pfam13936), Tra8 (COG2826)