myRT

myRT report for GCA_001900835.1_ASM190083v1

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Seq: CP010172.1 Escherichia coli strain H8, complete genome (4929892 bp)
Overview 1 RT 1: 20337-26179 bp 2 RT 2: 2613511-2619800 bp 3 RT 3: 4023139-4026458 bp Neighborhood of RT #1 [20337, 26214] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Neighborhood of RT #2 [2613511, 2620516] YeeP RVT-UG1 GerD HEPN_Apea Neighborhood of RT #3 [4023139, 4026661] RVT-GII GIIM PHA02517 Methyltransf_12 Feature: gene Location: 20337-20615 bp Ori: APK73624.1 Feature: domain Description: DUF5339 Location: 20400-20601 bp Feature: domain Description: DUF5339 Location: 20400-20601 bp Feature: gene Location: 20953-21975 bp Ori: APK78023.1 Feature: domain Description: Asparaginase_2 Location: 21034-21967 bp Feature: domain Description: Asparaginase_2 Location: 21 034-21 967 bp Feature: gene Location: 22508-22954 bp Ori: APK73625.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22814-22916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2281 4-2291 6 bp Feature: gene Location: 23600-24961 bp Ori: APK73626.1 Feature: domain Description: DcuC Location: 23603-24935 bp Feature: domain Description: DcuC Location: 23603-24935 bp Feature: gene Location: 24958-26214 bp Ori: APK73627.1 Feature: domain Description: PRK13381 Location: 24964-26179 bp Feature: domain Description: PRK1 3381 Location: 24964-261 79 bp Feature: gene Location: 2613511-2614383 bp Ori: APK75922.1 Feature: domain Description: YeeP Location: 2613514-2614381 bp Feature: domain Description: YeeP Location: 261 351 4-261 4381 bp Feature: gene Location: 2614987-2618676 bp Ori: APK75923.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2615599-2616109 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 261 5599-261 61 09 bp Feature: gene Location: 2618685-2619119 bp Ori: APK75924.1 Feature: domain Description: GerD Location: 2618763-2618877 bp Feature: domain Description: GerD Location: 261 8763-261 8877 bp Feature: gene Location: 2619416-2620516 bp Ori: APK75925.1 Feature: domain Description: HEPN_Apea Location: 2619485-2619800 bp Feature: domain Description: HEPN_Apea Location: 261 9485-261 9800 bp Feature: gene Location: 4023139-4023510 bp Feature: gene Location: 4023425-4023850 bp Feature: gene Location: 4023819-4025327 bp Ori: APK78194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024077-4024809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024077-4024809 bp Feature: domain Description: GIIM Note: maturase Location: 4024884-4025082 bp Feature: domain Description: GIIM Note: maturase Location: 4024884-4025082 bp Feature: gene Location: 4025504-4025890 bp Ori: APK77176.1 Feature: domain Description: PHA02517 Location: 4025507-4025888 bp Feature: domain Description: PHA0251 7 Location: 4025507-4025888 bp Feature: gene Location: 4026005-4026661 bp Ori: APK77177.1 Feature: domain Description: Methyltransf_12 Location: 4026167-4026458 bp Feature: domain Description: Methyltransf_1 2 Location: 40261 67-4026458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional), YeeP (COG3596), RVT-UG1, GerD (pfam17898), HEPN_Apea (pfam18739), GIIM (pfam08388)
PHA02517 (putative transposase OrfB; Reviewed), Methyltransf_12 (pfam08242)