myRT

myRT report for GCA_001900985.1_ASM190098v1

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Seq: CP010237.1 Escherichia coli strain S43, complete genome (5043711 bp)
Overview 1 RT 1: 754034-759603 bp 2 RT 2: 2318707-2324562 bp 3 RT 3: 3568389-3574316 bp 4 RT 4: 3842167-3853746 bp 5 RT 5: 4265299-4270662 bp Neighborhood of RT #1 [754034, 759713] PHA02517 RVT-GII GIIM COG3547 IS285 Neighborhood of RT #2 [2318707, 2324636] PulO T2SSM RVT-GII GIIM HTH_38 Tra8 InsE Neighborhood of RT #3 [3568389, 3574330] InsE PHA02517 RVT-GII GIIM PRK11139 MFS_ExuT_GudP_like Neighborhood of RT #4 [3842167, 3853757] DUF262 DUF1524 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #5 [4265299, 4270724] PRK11085 DDE_Tnp_IS1 RVT-GII GIIM PHA02517 Feature: gene Location: 754034-754459 bp Ori: APL74234.1 Feature: domain Description: PHA02517 Location: 754058-754394 bp Feature: domain Description: PHA0251 7 Location: 754058-754394 bp Feature: gene Location: 754672-755097 bp Feature: gene Location: 755066-756574 bp Ori: APL74236.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755324-756056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755324-756056 bp Feature: domain Description: GIIM Note: maturase Location: 756131-756329 bp Feature: domain Description: GIIM Note: maturase Location: 7561 31 -756329 bp Feature: gene Location: 757116-758192 bp Ori: APL74237.1 Feature: domain Description: COG3547 Location: 757155-758076 bp Feature: domain Description: COG3547 Location: 7571 55-758076 bp Feature: gene Location: 758415-759713 bp Ori: APL74238.1 Feature: domain Description: IS285 Location: 758445-759603 bp Feature: domain Description: IS285 Location: 758445-759603 bp Feature: gene Location: 2318707-2319384 bp Ori: APL75587.1 Feature: domain Description: PulO Location: 2318749-2319364 bp Feature: domain Description: PulO Location: 231 8749-231 9364 bp Feature: gene Location: 2319384-2319845 bp Ori: APL78135.1 Feature: domain Description: T2SSM Location: 2319390-2319834 bp Feature: domain Description: T2SSM Location: 231 9390-231 9834 bp Feature: gene Location: 2320553-2322061 bp Ori: APL78136.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2320811-2321543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232081 1 -2321 543 bp Feature: domain Description: GIIM Note: maturase Location: 2321618-2321816 bp Feature: domain Description: GIIM Note: maturase Location: 2321 61 8-2321 81 6 bp Feature: gene Location: 2323172-2324323 bp Ori: APL75588.1 Feature: domain Description: HTH_38 Location: 2323181-2323295 bp Feature: domain Description: HTH_38 Location: 23231 81 -2323295 bp Feature: domain Description: Tra8 Location: 2323331-2324312 bp Feature: domain Description: Tra8 Location: 2323331 -232431 2 bp Feature: gene Location: 2324280-2324636 bp Ori: APL75589.1 Feature: domain Description: InsE Location: 2324292-2324562 bp Feature: domain Description: InsE Location: 2324292-2324562 bp Feature: gene Location: 3568389-3568673 bp Ori: APL76706.1 Feature: domain Description: InsE Location: 3568401-3568662 bp Feature: domain Description: InsE Location: 3568401 -3568662 bp Feature: gene Location: 3568715-3569140 bp Ori: APL76707.1 Feature: domain Description: PHA02517 Location: 3568742-3569075 bp Feature: domain Description: PHA0251 7 Location: 3568742-3569075 bp Feature: gene Location: 3569747-3571255 bp Ori: APL78184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3570005-3570737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3570005-3570737 bp Feature: domain Description: GIIM Note: maturase Location: 3570812-3571010 bp Feature: domain Description: GIIM Note: maturase Location: 357081 2-3571 01 0 bp Feature: gene Location: 3571863-3572783 bp Ori: APL76708.1 Feature: domain Description: PRK11139 Location: 3571893-3572760 bp Feature: domain Description: PRK1 1 1 39 Location: 3571 893-3572760 bp Feature: gene Location: 3572999-3574330 bp Ori: APL76709.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 3573056-3574316 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 3573056-357431 6 bp Feature: gene Location: 3842167-3844209 bp Ori: APL76944.1 Feature: domain Description: DUF262 Location: 3842206-3842809 bp Feature: domain Description: DUF262 Location: 3842206-3842809 bp Feature: domain Description: DUF1524 Location: 3843832-3844180 bp Feature: domain Description: DUF1 524 Location: 3843832-38441 80 bp Feature: gene Location: 3844396-3850131 bp Ori: APL76945.1 Feature: domain Description: DUF4011 Location: 3844486-3845320 bp Feature: domain Description: DUF401 1 Location: 3844486-3845320 bp Feature: domain Description: DEXXQc_SF1 Location: 3845677-3848779 bp Feature: domain Description: DEXXQc_SF1 Location: 3845677-3848779 bp Feature: domain Description: SF1_C_Upf1 Location: 3848788-3849316 bp Feature: domain Description: SF1 _C_Upf1 Location: 3848788-384931 6 bp Feature: domain Description: MTES_1575 Location: 3849445-3849736 bp Feature: domain Description: MTES_1 575 Location: 3849445-3849736 bp Feature: gene Location: 3850891-3852399 bp Ori: APL78193.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3851149-3851881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3851 1 49-3851 881 bp Feature: domain Description: GIIM Note: maturase Location: 3851956-3852154 bp Feature: domain Description: GIIM Note: maturase Location: 3851 956-38521 54 bp Feature: gene Location: 3853006-3853425 bp Ori: APL76946.1 Feature: domain Description: PHA02517 Location: 3853021-3853360 bp Feature: domain Description: PHA0251 7 Location: 3853021 -3853360 bp Feature: gene Location: 3853473-3853757 bp Ori: APL76947.1 Feature: domain Description: InsE Location: 3853485-3853746 bp Feature: domain Description: InsE Location: 3853485-3853746 bp Feature: gene Location: 4265299-4266249 bp Ori: APL77336.1 Feature: domain Description: PRK11085 Location: 4265302-4266247 bp Feature: domain Description: PRK1 1 085 Location: 4265302-4266247 bp Feature: gene Location: 4267153-4267656 bp Ori: APL77337.1 Feature: domain Description: DDE_Tnp_IS1 Location: 4267264-4267654 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4267264-4267654 bp Feature: gene Location: 4268142-4269650 bp Ori: APL78213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4268400-4269132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4268400-42691 32 bp Feature: domain Description: GIIM Note: maturase Location: 4269207-4269405 bp Feature: domain Description: GIIM Note: maturase Location: 4269207-4269405 bp Feature: gene Location: 4269959-4270330 bp Feature: gene Location: 4270257-4270724 bp Ori: APL77339.1 Feature: domain Description: PHA02517 Location: 4270323-4270662 bp Feature: domain Description: PHA0251 7 Location: 4270323-4270662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), IS285 (COG3328), PulO (COG1989), T2SSM (pfam04612), HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963)
PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), MFS_ExuT_GudP_like (cd17319), DUF262 (pfam03235), DUF1524 (pfam07510), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), PRK11085 (magnesium/cobalt transporter CorA), DDE_Tnp_IS1 (pfam03400)