myRT

myRT report for GCA_001901125.1_ASM190112v1

Download annotations/find similar RTs

Seq: CP010200.1 Escherichia coli strain M10, complete genome (4821620 bp)
Overview 1 RT 1: 2389306-2396132 bp Neighborhood of RT #1 [2389306, 2396134] Prim_Zn_Ribbon COG3378 RVT-Retrons COG3943 PRK15011 Feature: gene Location: 2389306-2391639 bp Ori: APL18792.1 Feature: domain Description: Prim_Zn_Ribbon Location: 2389396-2389504 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2389396-2389504 bp Feature: domain Description: COG3378 Location: 2390116-2391628 bp Feature: domain Description: COG3378 Location: 23901 1 6-2391 628 bp Feature: gene Location: 2392241-2393191 bp Feature: gene Location: 2393178-2394128 bp Ori: APL18794.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2393277-2393868 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2393277-2393868 bp Feature: gene Location: 2394422-2394568 bp Ori: APL18795.1 Feature: domain Description: COG3943 Location: 2394425-2394524 bp Feature: domain Description: COG3943 Location: 2394425-2394524 bp Feature: gene Location: 2394950-2396134 bp Ori: APL18796.1 Feature: domain Description: PRK15011 Location: 2394959-2396132 bp Feature: domain Description: PRK1 501 1 Location: 2394959-23961 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)

Seq: CP010201.1 Escherichia coli strain M10 plasmid A, complete sequence (116581 bp)
Overview 1 RT 1: 154-4610 bp Neighborhood of RT #1 [154, 5722] RVT-GII Intron_maturas2 HNHc DUF905 Spo0J Feature: gene Location: 154-273 bp Feature: gene Location: 951-2852 bp Ori: APL21168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1218-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 18-2 049 bp Feature: domain Description: Intron_maturas2 Location: 2163-2421 bp Feature: domain Description: Intron_maturas2 Location: 2 163-2 42 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2595-2757 bp Feature: domain Description: HNHc Note: nucleases Location: 2 595-2 757 bp Feature: gene Location: 3472-3705 bp Ori: APL21169.1 Feature: domain Description: DUF905 Location: 3502-3700 bp Feature: domain Description: DUF905 Location: 3502 -3700 bp Feature: gene Location: 3764-5722 bp Ori: APL21170.1 Feature: domain Description: Spo0J Location: 3872-4610 bp Feature: domain Description: Spo0J Location: 3872 -4610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006), Spo0J (COG1475)