myRT

myRT report for GCA_001902355.1_ASM190235v1

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Seq: CP018365.1 Klebsiella pneumoniae strain Kp_Goe_62629 plasmid pKp_Goe_629-1, complete sequence (260772 bp)
Overview 1 RT 1: 29003-33445 bp 2 RT 2: 143247-148241 bp Neighborhood of RT #1 [29003, 33447] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Neighborhood of RT #2 [143247, 148243] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 29003-30274 bp Ori: APM56461.1 Feature: domain Description: umuC Location: 29006-30266 bp Feature: domain Description: umuC Location: 29006-30266 bp Feature: gene Location: 30274-30705 bp Ori: APM56462.1 Feature: domain Description: PRK10276 Location: 30325-30688 bp Feature: domain Description: PRK1 0276 Location: 30325-30688 bp Feature: gene Location: 31114-32598 bp Ori: APM56463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31516-32206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 51 6-32206 bp Feature: gene Location: 32750-33025 bp Ori: APM56464.1 Feature: domain Description: InsA Location: 32756-33017 bp Feature: domain Description: InsA Location: 32756-3301 7 bp Feature: gene Location: 32944-33447 bp Ori: APM56465.1 Feature: domain Description: DDE_Tnp_IS1 Location: 33055-33445 bp Feature: domain Description: DDE_Tnp_IS1 Location: 33055-33445 bp Feature: gene Location: 143247-144518 bp Ori: APM56565.1 Feature: domain Description: umuC Location: 143250-144513 bp Feature: domain Description: umuC Location: 1 43250-1 4451 3 bp Feature: gene Location: 144518-144943 bp Ori: APM56566.1 Feature: domain Description: PRK10276 Location: 144521-144929 bp Feature: domain Description: PRK1 0276 Location: 1 44521 -1 44929 bp Feature: gene Location: 145349-146833 bp Ori: APM56567.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145751-146441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45751 -1 46441 bp Feature: gene Location: 147067-147297 bp Feature: gene Location: 147818-148243 bp Ori: APM56569.1 Feature: domain Description: Antirestrict Location: 147953-148241 bp Feature: domain Description: Antirestrict Location: 1 47953-1 48241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400), Antirestrict (pfam03230)

Seq: CP018364.1 Klebsiella pneumoniae strain Kp_Goe_62629, complete genome (5423372 bp)
Overview 1 RT 1: 1841380-1847850 bp 2 RT 2: 3061244-3066393 bp 3 RT 3: 3197008-3202372 bp 4 RT 4: 3534475-3547740 bp 5 RT 5: 3986905-3988631 bp Neighborhood of RT #1 [1841380, 1847864] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3061244, 3066401] umuC PRK10276 RVT-GII XerC PinE Neighborhood of RT #3 [3197008, 3202428] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #4 [3534475, 3547760] DinI RVT-GII Phage_GPA dam Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #5 [3986905, 3989023] PRK10276 RVT-GII Feature: gene Location: 1841380-1842804 bp Ori: APM52756.1 Feature: domain Description: SbcB Location: 1841386-1842802 bp Feature: domain Description: SbcB Location: 1841386-1842 802 bp Feature: gene Location: 1842985-1844148 bp Ori: APM56262.1 Feature: domain Description: dacD Location: 1842988-1844143 bp Feature: domain Description: dacD Location: 1842 988-1844143 bp Feature: gene Location: 1844668-1846152 bp Ori: APM52757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1845070-1845760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1845070-1845760 bp Feature: gene Location: 1846234-1846707 bp Ori: APM52758.1 Feature: domain Description: PRK10016 Location: 1846237-1846696 bp Feature: domain Description: PRK10016 Location: 18462 37-1846696 bp Feature: gene Location: 1846806-1847864 bp Ori: APM52759.1 Feature: domain Description: YccC Location: 1846812-1847850 bp Feature: domain Description: YccC Location: 1846812 -1847850 bp Feature: gene Location: 3061244-3062509 bp Ori: APM53957.1 Feature: domain Description: umuC Location: 3061247-3062507 bp Feature: domain Description: umuC Location: 30612 47-3062 507 bp Feature: gene Location: 3062511-3062930 bp Ori: APM56319.1 Feature: domain Description: PRK10276 Location: 3062514-3062925 bp Feature: domain Description: PRK102 76 Location: 3062 514-3062 92 5 bp Feature: gene Location: 3063010-3064494 bp Ori: APM53958.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3063412-3064102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3063412 -3064102 bp Feature: gene Location: 3065392-3065814 bp Ori: APM53959.1 Feature: domain Description: XerC Location: 3065428-3065773 bp Feature: domain Description: XerC Location: 306542 8-3065773 bp Feature: gene Location: 3065892-3066401 bp Ori: APM53960.1 Feature: domain Description: PinE Location: 3065940-3066393 bp Feature: domain Description: PinE Location: 3065940-3066393 bp Feature: gene Location: 3197008-3198273 bp Ori: APM54095.1 Feature: domain Description: umuC Location: 3197011-3198271 bp Feature: domain Description: umuC Location: 3197011-31982 71 bp Feature: gene Location: 3198276-3198695 bp Ori: APM54096.1 Feature: domain Description: PRK10276 Location: 3198279-3198690 bp Feature: domain Description: PRK102 76 Location: 31982 79-3198690 bp Feature: gene Location: 3198774-3200258 bp Ori: APM54097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3199176-3199866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3199176-3199866 bp Feature: gene Location: 3200876-3201118 bp Ori: APM54098.1 Feature: domain Description: DinI Location: 3200927-3201107 bp Feature: domain Description: DinI Location: 32 0092 7-32 01107 bp Feature: gene Location: 3201289-3202428 bp Ori: APM54099.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3201472-3202372 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 32 01472 -32 02 372 bp Feature: gene Location: 3534475-3534708 bp Ori: APM54417.1 Feature: domain Description: DinI Location: 3534517-3534703 bp Feature: domain Description: DinI Location: 3534517-3534703 bp Feature: gene Location: 3534719-3534907 bp Feature: gene Location: 3535008-3536492 bp Ori: APM54419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3535410-3536100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3535410-3536100 bp Feature: gene Location: 3536971-3539385 bp Ori: APM54420.1 Feature: domain Description: Phage_GPA Location: 3537535-3538501 bp Feature: domain Description: Phage_GPA Location: 3537535-3538501 bp Feature: gene Location: 3539382-3540239 bp Ori: APM54421.1 Feature: domain Description: dam Location: 3539385-3540162 bp Feature: domain Description: dam Location: 3539385-3540162 bp Feature: gene Location: 3542186-3543064 bp Ori: APM54428.1 Feature: domain Description: Phage_CI_repr Location: 3542213-3542396 bp Feature: domain Description: Phage_CI_repr Location: 3542 2 13-3542 396 bp Feature: domain Description: Phage_CI_repr Location: 3542525-3542717 bp Feature: domain Description: Phage_CI_repr Location: 3542 52 5-3542 717 bp Feature: domain Description: Phage_CI_C Location: 3542744-3543038 bp Feature: domain Description: Phage_CI_C Location: 3542 744-3543038 bp Feature: gene Location: 3543076-3544020 bp Feature: gene Location: 3544119-3545603 bp Ori: APM54430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544521-3545211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354452 1-35452 11 bp Feature: gene Location: 3546022-3547074 bp Ori: APM54431.1 Feature: domain Description: int Location: 3546025-3547024 bp Feature: domain Description: int Location: 354602 5-354702 4 bp Feature: gene Location: 3547197-3547760 bp Ori: APM54432.1 Feature: domain Description: YbjK Location: 3547203-3547740 bp Feature: domain Description: YbjK Location: 35472 03-3547740 bp Feature: gene Location: 3986905-3987222 bp Ori: APM54838.1 Feature: domain Description: PRK10276 Location: 3986911-3987025 bp Feature: domain Description: PRK102 76 Location: 3986911-398702 5 bp Feature: gene Location: 3987222-3987461 bp Feature: gene Location: 3987539-3989023 bp Ori: APM54840.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3987941-3988631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3987941-3988631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), XerC (COG4973), PinE (COG1961), DinI (pfam06183)
GT9_LPS_heptosyltransferase (cd03789), Phage_GPA (pfam05840), dam (TIGR00571), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226)