myRT

myRT report for GCA_001902475.1_ASM190247v1

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Seq: CP018454.1 Klebsiella pneumoniae strain SWU01 chromosome, complete genome (5536506 bp)
Overview 1 RT 1: 248866-252115 bp 2 RT 2: 573148-579556 bp 3 RT 3: 648278-652386 bp 4 RT 4: 1663146-1668295 bp 5 RT 5: 2078109-2082990 bp 6 RT 6: 2532607-2536665 bp 7 RT 7: 2695197-2699233 bp Neighborhood of RT #1 [248866, 252507] YbjK int RVT-GII Neighborhood of RT #2 [573148, 579556] AbiH PRK05318 RVT-GII PRK10597 Neighborhood of RT #3 [648278, 652388] DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1663146, 1668303] umuC PRK10276 RVT-GII PinE Neighborhood of RT #5 [2078109, 2082995] YccC PRK10016 RVT-GII dacD Neighborhood of RT #6 [2532607, 2536665] Terminase_2 RVT-GII Neighborhood of RT #7 [2695197, 2700087] DinI RVT-GII Phage_GPA Feature: gene Location: 248866-249429 bp Feature: domain Description: YbjK Location: 248872-249409 bp Feature: domain Description: YbjK Location: 248872-249409 bp Feature: gene Location: 249552-250604 bp Feature: domain Description: int Location: 249555-250554 bp Feature: domain Description: int Location: 249555-250554 bp Feature: gene Location: 251020-252507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251425-252115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 425-2521 1 5 bp Feature: gene Location: 573148-574017 bp Feature: domain Description: AbiH Location: 573157-573925 bp Feature: domain Description: AbiH Location: 5731 57-573925 bp Feature: gene Location: 575256-576617 bp Feature: domain Description: PRK05318 Location: 575280-576579 bp Feature: domain Description: PRK0531 8 Location: 575280-576579 bp Feature: gene Location: 577455-578942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577860-578550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577860-578550 bp Feature: gene Location: 579021-579254 bp Feature: domain Description: PRK10597 Location: 579024-579249 bp Feature: domain Description: PRK1 0597 Location: 579024-579249 bp Feature: gene Location: 579299-579556 bp Feature: gene Location: 648278-648520 bp Feature: domain Description: DinI Location: 648329-648509 bp Feature: domain Description: DinI Location: 648329-648509 bp Feature: gene Location: 648535-648681 bp Feature: gene Location: 649135-650622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649540-650230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649540-650230 bp Feature: gene Location: 650701-651120 bp Feature: domain Description: PRK10276 Location: 650704-651115 bp Feature: domain Description: PRK1 0276 Location: 650704-651 1 1 5 bp Feature: gene Location: 651123-652388 bp Feature: domain Description: umuC Location: 651126-652386 bp Feature: domain Description: umuC Location: 651 1 26-652386 bp Feature: gene Location: 1663146-1664411 bp Feature: domain Description: umuC Location: 1663149-1664409 bp Feature: domain Description: umuC Location: 1 6631 49-1 664409 bp Feature: gene Location: 1664413-1664832 bp Feature: domain Description: PRK10276 Location: 1664416-1664827 bp Feature: domain Description: PRK1 0276 Location: 1 66441 6-1 664827 bp Feature: gene Location: 1664912-1666396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1665314-1666004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66531 4-1 666004 bp Feature: gene Location: 1666405-1666572 bp Feature: gene Location: 1667794-1668303 bp Feature: domain Description: PinE Location: 1667842-1668295 bp Feature: domain Description: PinE Location: 1 667842-1 668295 bp Feature: gene Location: 2078109-2079167 bp Feature: domain Description: YccC Location: 2078115-2079153 bp Feature: domain Description: YccC Location: 20781 1 5-20791 53 bp Feature: gene Location: 2079266-2079739 bp Feature: domain Description: PRK10016 Location: 2079269-2079728 bp Feature: domain Description: PRK1 001 6 Location: 2079269-2079728 bp Feature: gene Location: 2079821-2081305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080223-2080913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080223-208091 3 bp Feature: gene Location: 2081314-2081481 bp Feature: gene Location: 2081826-2082995 bp Feature: domain Description: dacD Location: 2081835-2082990 bp Feature: domain Description: dacD Location: 2081 835-2082990 bp Feature: gene Location: 2532607-2533191 bp Feature: domain Description: Terminase_2 Location: 2532652-2533117 bp Feature: domain Description: Terminase_2 Location: 2532652-25331 1 7 bp Feature: gene Location: 2533269-2533526 bp Feature: gene Location: 2533927-2535414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534332-2535022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534332-2535022 bp Feature: gene Location: 2535511-2535849 bp Feature: gene Location: 2536045-2536665 bp Feature: gene Location: 2695197-2695430 bp Feature: domain Description: DinI Location: 2695242-2695425 bp Feature: domain Description: DinI Location: 2695242-2695425 bp Feature: gene Location: 2695442-2695630 bp Feature: gene Location: 2695738-2697222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696140-2696830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26961 40-2696830 bp Feature: gene Location: 2697231-2697398 bp Feature: gene Location: 2697703-2700087 bp Feature: domain Description: Phage_GPA Location: 2698267-2699233 bp Feature: domain Description: Phage_GPA Location: 2698267-2699233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, AbiH (pfam14253), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PinE (COG1961)
YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), Terminase_2 (pfam03592), Phage_GPA (pfam05840)

Seq: CP018455.1 Klebsiella pneumoniae strain SWU01 plasmid unnamed, complete sequence (162552 bp)
Overview 1 RT 1: 38330-42412 bp 2 RT 2: 144294-148492 bp Neighborhood of RT #1 [38330, 42549] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [144294, 148494] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 38330-38761 bp Feature: domain Description: PRK10276 Location: 38381-38744 bp Feature: domain Description: PRK102 76 Location: 38381-38744 bp Feature: gene Location: 38959-39171 bp Feature: gene Location: 39246-40655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39573-40263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39573-402 63 bp Feature: gene Location: 40904-41875 bp Feature: domain Description: StbA Location: 40907-41852 bp Feature: domain Description: StbA Location: 40907-41852 bp Feature: gene Location: 41878-42549 bp Feature: domain Description: Plasmid_stab_B Location: 41893-42100 bp Feature: domain Description: Plasmid_stab_B Location: 41893-42 100 bp Feature: domain Description: Plasmid_stab_B Location: 42205-42412 bp Feature: domain Description: Plasmid_stab_B Location: 42 2 05-42 412 bp Feature: gene Location: 144294-144551 bp Feature: gene Location: 144582-144857 bp Feature: gene Location: 145431-147098 bp Feature: domain Description: RVT_N Location: 145479-145716 bp Feature: domain Description: RVT_N Location: 145479-145716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145767-146409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145767-146409 bp Feature: domain Description: GIIM Note: maturase Location: 146460-146694 bp Feature: domain Description: GIIM Note: maturase Location: 146460-146694 bp Feature: domain Description: HNHc Note: nucleases Location: 146904-147063 bp Feature: domain Description: HNHc Note: nucleases Location: 146904-147063 bp Feature: gene Location: 147600-148022 bp Feature: domain Description: DUF1380 Location: 147603-147897 bp Feature: domain Description: DUF1380 Location: 147603-147897 bp Feature: gene Location: 148069-148494 bp Feature: domain Description: Antirestrict Location: 148204-148492 bp Feature: domain Description: Antirestrict Location: 1482 04-148492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)