myRT

myRT report for GCA_001908315.1_ASM190831v1

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Seq: CP013127.1 Bradyrhizobium diazoefficiens strain USDA 122, complete genome (9136536 bp)
Overview 1 RT 1: 149103-154590 bp 2 RT 2: 1320865-1326954 bp 3 RT 3: 1848180-1852666 bp 4 RT 4: 2024574-2032842 bp 5 RT 5: 2108929-2115603 bp 6 RT 6: 2134735-2140102 bp 7 RT 7: 2181457-2187539 bp 8 RT 8: 2271049-2275961 bp 9 RT 9: 2530265-2536548 bp 10 RT 10: 2712608-2718188 bp 11 RT 11: 4958625-4964234 bp 12 RT 12: 9006659-9016685 bp 13 RT 13: 9067038-9070107 bp 14 RT 14: 9125393-9131744 bp Neighborhood of RT #1 [149103, 154613] BaeS COG4567 RVT-GII GIIM CdnL PreA DUF3470 Neighborhood of RT #2 [1320865, 1326954] PRK08242 fadJ RVT-GII GIIM Neighborhood of RT #3 [1848180, 1852666] RVT-GII DDE_5 Neighborhood of RT #4 [2024574, 2032931] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII CpaD Neighborhood of RT #5 [2108929, 2115603] COG3464 COG3464 RVT-GII DDE_5 Neighborhood of RT #6 [2134735, 2140419] DUF4096 RVT-GII CoiA Neighborhood of RT #7 [2181457, 2187544] LptD RVT-GII GIIM PRK06215 Neighborhood of RT #8 [2271049, 2276083] RVT-GII GIIM HTH_Tnp_1 Tra5 Neighborhood of RT #9 [2530265, 2536619] HTH_MARR DLH RVT-GII GIIM AmpC SDR_a4 Neighborhood of RT #10 [2712608, 2718188] ErfK RVT-GII GIIM PGDH_like_1 Neighborhood of RT #11 [4958625, 4964263] cysK COG3514 RVT-GII GIIM COG4249 PG_binding_1 RhaT Neighborhood of RT #12 [9006659, 9016699] P_ylase 4HBT_3 RVT-GII GIIM PRK09344 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Neighborhood of RT #13 [9067038, 9070148] DDE_Tnp_1_4 RVT-GII RVT-GII RVT-GII MmsB Neighborhood of RT #14 [9125393, 9131845] COG4584 IstB_IS21 RVT-GII rve rve Feature: gene Location: 149103-150500 bp Ori: APO48714.1 Feature: domain Description: BaeS Location: 149400-150471 bp Feature: domain Description: BaeS Location: 1 49400-1 50471 bp Feature: gene Location: 150490-151023 bp Ori: APO48715.1 Feature: domain Description: COG4567 Location: 150496-151021 bp Feature: domain Description: COG4567 Location: 1 50496-1 51 021 bp Feature: gene Location: 151285-152661 bp Ori: APO48716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151612-152230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 61 2-1 52230 bp Feature: domain Description: GIIM Note: maturase Location: 152281-152491 bp Feature: domain Description: GIIM Note: maturase Location: 1 52281 -1 52491 bp Feature: gene Location: 153142-153930 bp Ori: APO48717.1 Feature: domain Description: CdnL Location: 153340-153817 bp Feature: domain Description: CdnL Location: 1 53340-1 5381 7 bp Feature: gene Location: 154275-154613 bp Ori: APO48718.1 Feature: domain Description: PreA Location: 154287-154461 bp Feature: domain Description: PreA Location: 1 54287-1 54461 bp Feature: domain Description: DUF3470 Location: 154467-154590 bp Feature: domain Description: DUF3470 Location: 1 54467-1 54590 bp Feature: gene Location: 1320865-1322073 bp Ori: APO49769.1 Feature: domain Description: PRK08242 Location: 1320868-1322071 bp Feature: domain Description: PRK08242 Location: 1 320868-1 322071 bp Feature: gene Location: 1322094-1324307 bp Ori: APO49770.1 Feature: domain Description: fadJ Location: 1322106-1324278 bp Feature: domain Description: fadJ Location: 1 3221 06-1 324278 bp Feature: gene Location: 1324771-1326156 bp Ori: APO49771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1325107-1325725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3251 07-1 325725 bp Feature: domain Description: GIIM Note: maturase Location: 1325776-1325986 bp Feature: domain Description: GIIM Note: maturase Location: 1 325776-1 325986 bp Feature: gene Location: 1326348-1326542 bp Feature: gene Location: 1326631-1326954 bp Feature: gene Location: 1848180-1848563 bp Feature: gene Location: 1848621-1848977 bp Feature: gene Location: 1848984-1850459 bp Ori: APO50262.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849392-1850082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 849392-1 850082 bp Feature: gene Location: 1850558-1851907 bp Ori: APO50263.1 Feature: domain Description: DDE_5 Location: 1850636-1851428 bp Feature: domain Description: DDE_5 Location: 1 850636-1 851 428 bp Feature: gene Location: 1852298-1852666 bp Feature: gene Location: 2024574-2025800 bp Ori: APO50453.1 Feature: domain Description: COG4584 Location: 2024670-2025471 bp Feature: domain Description: COG4584 Location: 2024670-2025471 bp Feature: domain Description: COG4584 Location: 2025501-2025795 bp Feature: domain Description: COG4584 Location: 2025501 -2025795 bp Feature: gene Location: 2025959-2026663 bp Ori: APO50454.1 Feature: domain Description: IstB_IS21_ATP Location: 2025980-2026064 bp Feature: domain Description: IstB_IS21 _ATP Location: 2025980-2026064 bp Feature: domain Description: IstB_IS21 Location: 2026070-2026589 bp Feature: domain Description: IstB_IS21 Location: 2026070-2026589 bp Feature: gene Location: 2028197-2028886 bp Ori: APO50455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028524-2028845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028524-2028845 bp Feature: gene Location: 2029758-2032073 bp Feature: gene Location: 2032269-2032931 bp Ori: APO50457.1 Feature: domain Description: CpaD Location: 2032302-2032842 bp Feature: domain Description: CpaD Location: 2032302-2032842 bp Feature: gene Location: 2108929-2110485 bp Ori: APO50530.1 Feature: domain Description: COG3464 Location: 2109043-2109202 bp Feature: domain Description: COG3464 Location: 21 09043-21 09202 bp Feature: domain Description: COG3464 Location: 2109277-2110474 bp Feature: domain Description: COG3464 Location: 21 09277-21 1 0474 bp Feature: gene Location: 2111781-2112137 bp Feature: gene Location: 2112144-2113619 bp Ori: APO50532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2112552-2113242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 2552-21 1 3242 bp Feature: gene Location: 2113743-2115101 bp Ori: APO50533.1 Feature: domain Description: DDE_5 Location: 2113833-2114622 bp Feature: domain Description: DDE_5 Location: 21 1 3833-21 1 4622 bp Feature: gene Location: 2115178-2115603 bp Feature: gene Location: 2134735-2135127 bp Ori: APO50553.1 Feature: domain Description: DUF4096 Location: 2134759-2134972 bp Feature: domain Description: DUF4096 Location: 21 34759-21 34972 bp Feature: gene Location: 2135075-2135458 bp Feature: gene Location: 2135879-2137354 bp Ori: APO50555.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2136287-2136977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 36287-21 36977 bp Feature: gene Location: 2138732-2139592 bp Feature: gene Location: 2139715-2140419 bp Ori: APO50557.1 Feature: domain Description: CoiA Location: 2139763-2140102 bp Feature: domain Description: CoiA Location: 21 39763-21 401 02 bp Feature: gene Location: 2181457-2183910 bp Ori: APO50593.1 Feature: domain Description: LptD Location: 2181637-2183833 bp Feature: domain Description: LptD Location: 21 81 637-21 83833 bp Feature: gene Location: 2183928-2184119 bp Feature: gene Location: 2184711-2185940 bp Ori: APO50595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2184912-2185569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8491 2-21 85569 bp Feature: domain Description: GIIM Note: maturase Location: 2185644-2185848 bp Feature: domain Description: GIIM Note: maturase Location: 21 85644-21 85848 bp Feature: gene Location: 2186198-2186566 bp Feature: gene Location: 2186807-2187544 bp Ori: APO50597.1 Feature: domain Description: PRK06215 Location: 2186816-2187539 bp Feature: domain Description: PRK0621 5 Location: 21 8681 6-21 87539 bp Feature: gene Location: 2271049-2271348 bp Feature: gene Location: 2271816-2272049 bp Feature: gene Location: 2273558-2274802 bp Ori: APO50677.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273759-2274416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273759-227441 6 bp Feature: domain Description: GIIM Note: maturase Location: 2274494-2274722 bp Feature: domain Description: GIIM Note: maturase Location: 2274494-2274722 bp Feature: gene Location: 2274979-2275233 bp Ori: APO50678.1 Feature: domain Description: HTH_Tnp_1 Location: 2274985-2275192 bp Feature: domain Description: HTH_Tnp_1 Location: 2274985-22751 92 bp Feature: gene Location: 2275211-2276083 bp Ori: APO50679.1 Feature: domain Description: Tra5 Location: 2275253-2275961 bp Feature: domain Description: Tra5 Location: 2275253-2275961 bp Feature: gene Location: 2530265-2530843 bp Ori: APO50922.1 Feature: domain Description: HTH_MARR Location: 2530334-2530568 bp Feature: domain Description: HTH_MARR Location: 2530334-2530568 bp Feature: gene Location: 2531508-2532395 bp Ori: APO50923.1 Feature: domain Description: DLH Location: 2531688-2532381 bp Feature: domain Description: DLH Location: 2531 688-2532381 bp Feature: gene Location: 2532902-2534287 bp Ori: APO50924.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2533238-2533856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2533238-2533856 bp Feature: domain Description: GIIM Note: maturase Location: 2533907-2534117 bp Feature: domain Description: GIIM Note: maturase Location: 2533907-25341 1 7 bp Feature: gene Location: 2534382-2535650 bp Ori: APO50925.1 Feature: domain Description: AmpC Location: 2534388-2535597 bp Feature: domain Description: AmpC Location: 2534388-2535597 bp Feature: gene Location: 2535768-2536619 bp Ori: APO50926.1 Feature: domain Description: SDR_a4 Location: 2535777-2536548 bp Feature: domain Description: SDR_a4 Location: 2535777-2536548 bp Feature: gene Location: 2712608-2713375 bp Feature: gene Location: 2713744-2714946 bp Ori: APO51078.1 Feature: domain Description: ErfK Location: 2714107-2714800 bp Feature: domain Description: ErfK Location: 271 41 07-271 4800 bp Feature: gene Location: 2715413-2716798 bp Ori: APO51079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2715749-2716367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 5749-271 6367 bp Feature: domain Description: GIIM Note: maturase Location: 2716418-2716628 bp Feature: domain Description: GIIM Note: maturase Location: 271 641 8-271 6628 bp Feature: gene Location: 2716879-2717841 bp Ori: APO51080.1 Feature: domain Description: PGDH_like_1 Location: 2716894-2717815 bp Feature: domain Description: PGDH_like_1 Location: 271 6894-271 781 5 bp Feature: gene Location: 2717973-2718188 bp Feature: gene Location: 4958625-4959602 bp Ori: APO53224.1 Feature: domain Description: cysK Location: 4958697-4959591 bp Feature: domain Description: cysK Location: 4958697-4959591 bp Feature: gene Location: 4959606-4959845 bp Ori: APO53225.1 Feature: domain Description: COG3514 Location: 4959651-4959834 bp Feature: domain Description: COG351 4 Location: 4959651 -4959834 bp Feature: gene Location: 4960324-4961700 bp Ori: APO53226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4960651-4961269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4960651 -4961 269 bp Feature: domain Description: GIIM Note: maturase Location: 4961320-4961530 bp Feature: domain Description: GIIM Note: maturase Location: 4961 320-4961 530 bp Feature: gene Location: 4961798-4963225 bp Ori: APO53227.1 Feature: domain Description: COG4249 Location: 4961864-4962641 bp Feature: domain Description: COG4249 Location: 4961 864-4962641 bp Feature: domain Description: PG_binding_1 Location: 4962875-4963031 bp Feature: domain Description: PG_binding_1 Location: 4962875-4963031 bp Feature: gene Location: 4963427-4964263 bp Ori: APO53228.1 Feature: domain Description: RhaT Location: 4963448-4964234 bp Feature: domain Description: RhaT Location: 4963448-4964234 bp Feature: gene Location: 9006659-9009175 bp Ori: APO56948.1 Feature: domain Description: P_ylase Location: 9006752-9009122 bp Feature: domain Description: P_ylase Location: 9006752-90091 22 bp Feature: gene Location: 9009343-9010158 bp Ori: APO56949.1 Feature: domain Description: 4HBT_3 Location: 9009445-9010147 bp Feature: domain Description: 4HBT_3 Location: 9009445-901 01 47 bp Feature: gene Location: 9010355-9011740 bp Ori: APO56950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9010691-9011309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 0691 -901 1 309 bp Feature: domain Description: GIIM Note: maturase Location: 9011360-9011570 bp Feature: domain Description: GIIM Note: maturase Location: 901 1 360-901 1 570 bp Feature: gene Location: 9012204-9013820 bp Ori: APO56951.1 Feature: domain Description: PRK09344 Location: 9012243-9013800 bp Feature: domain Description: PRK09344 Location: 901 2243-901 3800 bp Feature: gene Location: 9014105-9016699 bp Ori: APO56952.1 Feature: domain Description: TPR_12 Location: 9014207-9014414 bp Feature: domain Description: TPR_1 2 Location: 901 4207-901 441 4 bp Feature: domain Description: TPR_12 Location: 9014453-9014666 bp Feature: domain Description: TPR_1 2 Location: 901 4453-901 4666 bp Feature: domain Description: TPR_12 Location: 9014693-9014915 bp Feature: domain Description: TPR_1 2 Location: 901 4693-901 491 5 bp Feature: domain Description: TPR_10 Location: 9014951-9015035 bp Feature: domain Description: TPR_1 0 Location: 901 4951 -901 5035 bp Feature: domain Description: CHAT Location: 9015668-9016685 bp Feature: domain Description: CHAT Location: 901 5668-901 6685 bp Feature: gene Location: 9067038-9067442 bp Feature: gene Location: 9067615-9068070 bp Ori: APO57000.1 Feature: domain Description: DDE_Tnp_1_4 Location: 9067651-9067825 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 9067651 -9067825 bp Feature: gene Location: 9068169-9068855 bp Ori: APO57001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9068172-9068478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90681 72-9068478 bp Feature: gene Location: 9068888-9069082 bp Ori: APO57002.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9068918-9069071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906891 8-9069071 bp Feature: gene Location: 9069087-9069647 bp Ori: APO57003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9069495-9069573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9069495-9069573 bp Feature: gene Location: 9069654-9069983 bp Feature: gene Location: 9069984-9070148 bp Ori: APO57005.1 Feature: domain Description: MmsB Location: 9069996-9070107 bp Feature: domain Description: MmsB Location: 9069996-90701 07 bp Feature: gene Location: 9125393-9126892 bp Ori: APO57077.1 Feature: domain Description: COG4584 Location: 9125462-9126248 bp Feature: domain Description: COG4584 Location: 91 25462-91 26248 bp Feature: gene Location: 9126892-9127755 bp Ori: APO57078.1 Feature: domain Description: IstB_IS21 Location: 9127054-9127579 bp Feature: domain Description: IstB_IS21 Location: 91 27054-91 27579 bp Feature: gene Location: 9127623-9128396 bp Ori: APO57079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9127959-9128265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 27959-91 28265 bp Feature: gene Location: 9129680-9131191 bp Ori: APO57080.1 Feature: domain Description: rve Location: 9130187-9130508 bp Feature: domain Description: rve Location: 91 301 87-91 30508 bp Feature: gene Location: 9131543-9131845 bp Ori: APO57081.1 Feature: domain Description: rve Location: 9131546-9131744 bp Feature: domain Description: rve Location: 91 31 546-91 31 744 bp Sorry, your browser does not 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Associated domains:myRT BaeS (COG0642), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), RVT-GII, GIIM (pfam08388), CdnL (COG1329), PreA (COG1146), DUF3470 (pfam11953), PRK08242 (acetyl-CoA C-acetyltransferase), fadJ (PRK11154), DDE_5 (pfam13546)
COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), CpaD (COG5461), COG3464 (Transposase ), DUF4096 (pfam13340), CoiA (pfam06054), LptD (COG1452), PRK06215 (hypothetical protein; Provisional), HTH_Tnp_1 (pfam01527)
Tra5 (COG2801), HTH_MARR (smart00347), DLH (pfam01738), AmpC (COG1680), SDR_a4 (cd05266), ErfK (COG1376), PGDH_like_1 (cd12169), cysK (TIGR01139), COG3514 (Uncharacterized conserved protein, DUF4415 family ), COG4249 (Uncharacterized protein, contains caspase domain )
PG_binding_1 (pfam01471), RhaT (TIGR00776), P_ylase (TIGR02093), 4HBT_3 (pfam13622), PRK09344 (phosphoenolpyruvate carboxykinase), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), DDE_Tnp_1_4 (pfam13701), MmsB (COG2084)
rve (pfam00665)