myRT

myRT report for GCA_001913175.1_ASM191317v1

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Seq: CP018737.1 Klebsiella pneumoniae strain Kp_Goe_121641 plasmid pKp_Goe_641-1, complete sequence (72952 bp)
Overview 1 RT 1: 40533-46474 bp 2 RT 2: 52151-57274 bp Neighborhood of RT #1 [40533, 46474] umuC PRK10276 RVT-GII ArdC Neighborhood of RT #2 [52151, 57285] Phage_integrase COG3547 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 40533-41804 bp Ori: APQ29111.1 Gene: dinB_3 Feature: domain Description: umuC Location: 40536-41796 bp Feature: domain Description: umuC Location: 40536-41 796 bp Feature: gene Location: 41804-42235 bp Ori: APQ29112.1 Gene: lexA_4 Feature: domain Description: PRK10276 Location: 41855-42218 bp Feature: domain Description: PRK1 0276 Location: 41 855-4221 8 bp Feature: gene Location: 42644-44128 bp Ori: APQ29113.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43046-43736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43046-43736 bp Feature: gene Location: 44598-45563 bp Ori: APQ29114.1 Gene: traC_6 Feature: domain Description: ArdC Location: 44724-45558 bp Feature: domain Description: ArdC Location: 44724-45558 bp Feature: gene Location: 46043-46474 bp Feature: gene Location: 52151-52498 bp Ori: APQ29126.1 Gene: xerC_6 Feature: domain Description: Phage_integrase Location: 52157-52385 bp Feature: domain Description: Phage_integrase Location: 521 57-52385 bp Feature: gene Location: 52798-53874 bp Ori: APQ29127.1 Feature: domain Description: COG3547 Location: 52837-53758 bp Feature: domain Description: COG3547 Location: 52837-53758 bp Feature: gene Location: 54416-55939 bp Ori: APQ29128.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54689-55421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54689-55421 bp Feature: domain Description: GIIM Note: maturase Location: 55496-55694 bp Feature: domain Description: GIIM Note: maturase Location: 55496-55694 bp Feature: gene Location: 56531-56770 bp Ori: APQ29129.1 Feature: domain Description: PHA02517 Location: 56534-56705 bp Feature: domain Description: PHA0251 7 Location: 56534-56705 bp Feature: gene Location: 56983-57285 bp Ori: APQ29130.1 Feature: domain Description: InsE Location: 56992-57274 bp Feature: domain Description: InsE Location: 56992-57274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227), Phage_integrase (pfam00589), COG3547 (Transposase ), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: CP018735.1 Klebsiella pneumoniae strain Kp_Goe_121641, complete genome (5478335 bp)
Overview 1 RT 1: 1216089-1219163 bp 2 RT 2: 1881293-1888910 bp Neighborhood of RT #1 [1216089, 1219168] PRK09678 RVT-Retrons SmpB PRK10724 Neighborhood of RT #2 [1881293, 1888945] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 1216089-1216307 bp Ori: APQ25062.1 Feature: domain Description: PRK09678 Location: 1216092-1216290 bp Feature: domain Description: PRK09678 Location: 12 16092 -12 162 90 bp Feature: gene Location: 1216569-1216742 bp Feature: gene Location: 1216711-1217484 bp Ori: APQ25064.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1216771-1217308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 16771-12 17308 bp Feature: gene Location: 1218099-1218581 bp Ori: APQ25065.1 Gene: smpB Feature: domain Description: SmpB Location: 1218129-1218573 bp Feature: domain Description: SmpB Location: 12 1812 9-12 18573 bp Feature: gene Location: 1218731-1219168 bp Ori: APQ25066.1 Gene: ratA Feature: domain Description: PRK10724 Location: 1218734-1219163 bp Feature: domain Description: PRK1072 4 Location: 12 18734-12 19163 bp Feature: gene Location: 1881293-1881544 bp Feature: gene Location: 1881541-1882410 bp Ori: APQ25659.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1882063-1882234 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1882 063-1882 2 34 bp Feature: gene Location: 1883066-1884166 bp Ori: APQ25660.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1883249-1883777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18832 49-1883777 bp Feature: gene Location: 1884281-1886527 bp Ori: APQ25661.1 Feature: domain Description: AAA_15 Location: 1884284-1885292 bp Feature: domain Description: AAA_15 Location: 18842 84-18852 92 bp Feature: gene Location: 1887926-1888945 bp Ori: APQ25662.1 Feature: domain Description: DUF4917 Location: 1887986-1888910 bp Feature: domain Description: DUF4917 Location: 1887986-1888910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin), Nuc_deoxyrib_tr (pfam05014), AAA_15 (pfam13175), DUF4917 (pfam16263)