myRT

myRT report for GCA_001921925.1_ASM192192v1

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Seq: CP013681.1 Clostridium botulinum strain 1169 chromosome, complete genome (4217365 bp)
Overview 1 RT 1: 365118-371311 bp 2 RT 2: 413597-418884 bp 3 RT 3: 1201269-1205930 bp 4 RT 4: 1242122-1245893 bp 5 RT 5: 2038814-2045419 bp 6 RT 6: 2051611-2057461 bp Neighborhood of RT #1 [365118, 371337] RutF NimA RVT_N RVT-GII GIIM HNHc ABC2_membrane_2 CcmA Neighborhood of RT #2 [413597, 418907] RVT_N RVT-GII GIIM HNHc TIGR02271 YsnF Neighborhood of RT #3 [1201269, 1205930] DUF1836 HD_3 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [1242122, 1245893] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #5 [2038814, 2045424] tgl RVT_N RVT-GII GIIM HNHc DUF3862 Neighborhood of RT #6 [2051611, 2057625] GIY-YIG_LuxR_like RVT_N RVT-GII GIIM McrA PcnB YcgL Feature: gene Location: 365118-365672 bp Ori: APQ69979.1 Feature: domain Description: RutF Location: 365157-365619 bp Feature: domain Description: RutF Location: 3651 57-36561 9 bp Feature: gene Location: 366157-366651 bp Ori: APQ68626.1 Feature: domain Description: NimA Location: 366169-366619 bp Feature: domain Description: NimA Location: 3661 69-36661 9 bp Feature: gene Location: 367434-369260 bp Ori: APQ69554.1 Gene: ltrA Feature: domain Description: RVT_N Location: 367491-367728 bp Feature: domain Description: RVT_N Location: 367491 -367728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367791-368445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367791 -368445 bp Feature: domain Description: GIIM Note: maturase Location: 368508-368742 bp Feature: domain Description: GIIM Note: maturase Location: 368508-368742 bp Feature: domain Description: HNHc Note: nucleases Location: 368949-369114 bp Feature: domain Description: HNHc Note: nucleases Location: 368949-3691 1 4 bp Feature: gene Location: 369607-370401 bp Ori: APQ69398.1 Feature: domain Description: ABC2_membrane_2 Location: 369628-370258 bp Feature: domain Description: ABC2_membrane_2 Location: 369628-370258 bp Feature: gene Location: 370420-371337 bp Ori: APQ70786.1 Feature: domain Description: CcmA Location: 370426-371311 bp Feature: domain Description: CcmA Location: 370426-371 31 1 bp Feature: gene Location: 413597-413719 bp Feature: gene Location: 414049-414435 bp Feature: gene Location: 415517-417343 bp Ori: APQ70817.1 Gene: ltrA Feature: domain Description: RVT_N Location: 415574-415811 bp Feature: domain Description: RVT_N Location: 41 5574-41 581 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415874-416528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5874-41 6528 bp Feature: domain Description: GIIM Note: maturase Location: 416591-416825 bp Feature: domain Description: GIIM Note: maturase Location: 41 6591 -41 6825 bp Feature: domain Description: HNHc Note: nucleases Location: 417032-417197 bp Feature: domain Description: HNHc Note: nucleases Location: 41 7032-41 71 97 bp Feature: gene Location: 417684-418160 bp Ori: APQ70954.1 Feature: domain Description: TIGR02271 Location: 417780-418119 bp Feature: domain Description: TIGR02271 Location: 41 7780-41 81 1 9 bp Feature: gene Location: 418239-418907 bp Ori: APQ67688.1 Feature: domain Description: YsnF Location: 418449-418884 bp Feature: domain Description: YsnF Location: 41 8449-41 8884 bp Feature: gene Location: 1201269-1201865 bp Ori: APQ68067.1 Feature: domain Description: DUF1836 Location: 1201335-1201656 bp Feature: domain Description: DUF1 836 Location: 1 201 335-1 201 656 bp Feature: gene Location: 1202234-1202794 bp Ori: APQ71103.1 Feature: domain Description: HD_3 Location: 1202273-1202747 bp Feature: domain Description: HD_3 Location: 1 202273-1 202747 bp Feature: gene Location: 1203447-1205273 bp Ori: APQ69300.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1203504-1203741 bp Feature: domain Description: RVT_N Location: 1 203504-1 203741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1203804-1204458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 203804-1 204458 bp Feature: domain Description: GIIM Note: maturase Location: 1204521-1204755 bp Feature: domain Description: GIIM Note: maturase Location: 1 204521 -1 204755 bp Feature: domain Description: HNHc Note: nucleases Location: 1204962-1205127 bp Feature: domain Description: HNHc Note: nucleases Location: 1 204962-1 2051 27 bp Feature: gene Location: 1205393-1205611 bp Feature: gene Location: 1205661-1205930 bp Feature: gene Location: 1242122-1242598 bp Feature: gene Location: 1242638-1243093 bp Feature: gene Location: 1243711-1245537 bp Ori: APQ68467.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1243768-1244005 bp Feature: domain Description: RVT_N Location: 1 243768-1 244005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244068-1244722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 244068-1 244722 bp Feature: domain Description: GIIM Note: maturase Location: 1244785-1245019 bp Feature: domain Description: GIIM Note: maturase Location: 1 244785-1 24501 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1245226-1245391 bp Feature: domain Description: HNHc Note: nucleases Location: 1 245226-1 245391 bp Feature: gene Location: 1245560-1245748 bp Feature: gene Location: 1245678-1245893 bp Feature: gene Location: 2038814-2039635 bp Ori: APQ69505.1 Feature: domain Description: tgl Location: 2038817-2039627 bp Feature: domain Description: tgl Location: 203881 7-2039627 bp Feature: gene Location: 2039632-2040627 bp Feature: gene Location: 2041318-2043144 bp Ori: APQ67593.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2041375-2041612 bp Feature: domain Description: RVT_N Location: 2041 375-2041 61 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2041675-2042329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2041 675-2042329 bp Feature: domain Description: GIIM Note: maturase Location: 2042392-2042626 bp Feature: domain Description: GIIM Note: maturase Location: 2042392-2042626 bp Feature: domain Description: HNHc Note: nucleases Location: 2042833-2042998 bp Feature: domain Description: HNHc Note: nucleases Location: 2042833-2042998 bp Feature: gene Location: 2043849-2044148 bp Feature: gene Location: 2044828-2045424 bp Ori: APQ70987.1 Feature: domain Description: DUF3862 Location: 2045008-2045419 bp Feature: domain Description: DUF3862 Location: 2045008-204541 9 bp Feature: gene Location: 2051611-2051970 bp Ori: APQ67780.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 2051632-2051926 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 2051 632-2051 926 bp Feature: gene Location: 2052041-2052523 bp Feature: gene Location: 2052819-2054522 bp Ori: APQ67450.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2052840-2052999 bp Feature: domain Description: RVT_N Location: 2052840-2052999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053059-2053710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053059-205371 0 bp Feature: domain Description: GIIM Note: maturase Location: 2053773-2054007 bp Feature: domain Description: GIIM Note: maturase Location: 2053773-2054007 bp Feature: domain Description: McrA Location: 2054106-2054421 bp Feature: domain Description: McrA Location: 20541 06-2054421 bp Feature: gene Location: 2055273-2056625 bp Ori: APQ68605.1 Feature: domain Description: PcnB Location: 2055312-2056575 bp Feature: domain Description: PcnB Location: 205531 2-2056575 bp Feature: gene Location: 2056615-2057625 bp Ori: APQ69332.1 Feature: domain Description: YcgL Location: 2056678-2057461 bp Feature: domain Description: YcgL Location: 2056678-2057461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), NimA (COG3467), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ABC2_membrane_2 (pfam12679), CcmA (COG4133), TIGR02271 (conserved domain), YsnF (COG3861)
DUF1836 (pfam08876), HD_3 (pfam13023), tgl (PRK03187), DUF3862 (pfam12978), GIY-YIG_LuxR_like (cd10451), McrA (COG4058), PcnB (COG0617), YcgL (pfam05166)