myRT

myRT report for GCA_001921945.1_ASM192194v1

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Seq: CP013683.1 Clostridium botulinum strain AM282 chromosome, complete genome (3928293 bp)
Overview 1 RT 1: 1123879-1130270 bp 2 RT 2: 2397416-2402933 bp Neighborhood of RT #1 [1123879, 1130308] Beta-lactamase HTH_XRE ECM27 RVT-GII HNHc xerC VOC_like Neighborhood of RT #2 [2397416, 2403181] COG4185 RVT-Retrons AAA_15 TOPRIM_OLD HNH_4 Feature: gene Location: 1123879-1125327 bp Ori: APQ75178.1 Feature: domain Description: Beta-lactamase Location: 1124008-1124974 bp Feature: domain Description: Beta-lactamase Location: 1 1 24008-1 1 24974 bp Feature: gene Location: 1125520-1126125 bp Ori: APQ78237.1 Feature: domain Description: HTH_XRE Location: 1125535-1125700 bp Feature: domain Description: HTH_XRE Location: 1 1 25535-1 1 25700 bp Feature: domain Description: ECM27 Location: 1125739-1126081 bp Feature: domain Description: ECM27 Location: 1 1 25739-1 1 26081 bp Feature: gene Location: 1126602-1128419 bp Ori: APQ78195.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126920-1127622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 26920-1 1 27622 bp Feature: domain Description: HNHc Note: nucleases Location: 1128171-1128309 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 281 71 -1 1 28309 bp Feature: gene Location: 1129131-1129820 bp Ori: APQ75171.1 Feature: domain Description: xerC Location: 1129188-1129806 bp Feature: domain Description: xerC Location: 1 1 291 88-1 1 29806 bp Feature: gene Location: 1129886-1130308 bp Ori: APQ77899.1 Feature: domain Description: VOC_like Location: 1129910-1130270 bp Feature: domain Description: VOC_like Location: 1 1 2991 0-1 1 30270 bp Feature: gene Location: 2397416-2397712 bp Ori: APQ76973.1 Feature: domain Description: COG4185 Location: 2397422-2397707 bp Feature: domain Description: COG41 85 Location: 2397422-2397707 bp Feature: gene Location: 2397764-2398132 bp Feature: gene Location: 2398520-2399569 bp Ori: APQ77512.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2398652-2399234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2398652-2399234 bp Feature: gene Location: 2399833-2401839 bp Ori: APQ76245.1 Feature: domain Description: AAA_15 Location: 2399842-2400772 bp Feature: domain Description: AAA_1 5 Location: 2399842-2400772 bp Feature: domain Description: TOPRIM_OLD Location: 2400913-2401120 bp Feature: domain Description: TOPRIM_OLD Location: 240091 3-2401 1 20 bp Feature: gene Location: 2402012-2403181 bp Ori: APQ75763.1 Feature: domain Description: HNH_4 Location: 2402780-2402933 bp Feature: domain Description: HNH_4 Location: 2402780-2402933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta-lactamase (pfam00144), HTH_XRE (smart00530), ECM27 (COG0530), RVT-GII, HNHc (smart00507), xerC (PRK01287), VOC_like (cd16355), COG4185 (Predicted ABC-type ATPase ), RVT-Retrons, AAA_15 (pfam13175)
TOPRIM_OLD (cd01026), HNH_4 (pfam13395)