myRT

myRT report for GCA_001931535.1_ASM193153v1

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Seq: CP016211.1 Minicystis rosea strain DSM 24000, complete genome (16040666 bp)
Overview 1 RT 1: 53789-56618 bp 2 RT 2: 868960-881749 bp 3 RT 3: 2175564-2182542 bp 4 RT 4: 4595579-4600340 bp 5 RT 5: 4625880-4629967 bp 6 RT 6: 15276460-15281900 bp Neighborhood of RT #1 [53789, 56719] RVT-GII Beta-lactamase Neighborhood of RT #2 [868960, 881749] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 SWIM WGR_MMR_like RVT-Retrons STKc_PknB_like pfam03781 Neighborhood of RT #3 [2175564, 2182580] ManC RsuA RVT-G2L4 PRK13531 DUF2079 Neighborhood of RT #4 [4595579, 4600340] PgsA RVT-GII Neighborhood of RT #5 [4625880, 4629990] SRPBCC_8 FDH_like_1 RVT-GII OYE_YqiM_FMN COG3548 Neighborhood of RT #6 [15276460, 15281900] NT_GlnE_GlnD_like CBS_pair_bact_arch RVT-Retrons FkpA FkpA Feature: gene Location: 53789-54151 bp Feature: gene Location: 54463-54807 bp Feature: gene Location: 55007-55336 bp Ori: APR74721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55013-55325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501 3-55325 bp Feature: gene Location: 55379-55492 bp Feature: gene Location: 55526-56719 bp Ori: APR74723.1 Feature: domain Description: Beta-lactamase Location: 55667-56618 bp Feature: domain Description: Beta-lactamase Location: 55667-5661 8 bp Feature: gene Location: 868960-875295 bp Ori: APR75440.1 Feature: domain Description: WD40 Location: 869386-869869 bp Feature: domain Description: WD40 Location: 869386-869869 bp Feature: domain Description: HEAT_2 Location: 869935-870169 bp Feature: domain Description: HEAT_2 Location: 869935-8701 69 bp Feature: domain Description: HEAT_2 Location: 870739-870985 bp Feature: domain Description: HEAT_2 Location: 870739-870985 bp Feature: domain Description: HEAT_2 Location: 871252-871435 bp Feature: domain Description: HEAT_2 Location: 871 252-871 435 bp Feature: domain Description: HEAT Location: 871510-871573 bp Feature: domain Description: HEAT Location: 871 51 0-871 573 bp Feature: domain Description: HEAT_2 Location: 871753-871924 bp Feature: domain Description: HEAT_2 Location: 871 753-871 924 bp Feature: domain Description: HEAT_2 Location: 872080-872305 bp Feature: domain Description: HEAT_2 Location: 872080-872305 bp Feature: domain Description: HEAT_2 Location: 872644-872785 bp Feature: domain Description: HEAT_2 Location: 872644-872785 bp Feature: domain Description: HEAT_2 Location: 873076-873283 bp Feature: domain Description: HEAT_2 Location: 873076-873283 bp Feature: domain Description: HEAT_2 Location: 873637-873814 bp Feature: domain Description: HEAT_2 Location: 873637-87381 4 bp Feature: domain Description: HEAT_2 Location: 874003-874249 bp Feature: domain Description: HEAT_2 Location: 874003-874249 bp Feature: domain Description: HEAT_2 Location: 875116-875239 bp Feature: domain Description: HEAT_2 Location: 8751 1 6-875239 bp Feature: gene Location: 875292-877190 bp Ori: APR75441.1 Feature: domain Description: SWIM Location: 876804-876903 bp Feature: domain Description: SWIM Location: 876804-876903 bp Feature: domain Description: WGR_MMR_like Location: 877017-877173 bp Feature: domain Description: WGR_MMR_like Location: 87701 7-8771 73 bp Feature: gene Location: 877247-878554 bp Ori: APR75442.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 877709-878336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 877709-878336 bp Feature: gene Location: 878614-881127 bp Ori: APR75443.1 Feature: domain Description: STKc_PknB_like Location: 878743-879610 bp Feature: domain Description: STKc_PknB_like Location: 878743-87961 0 bp Feature: domain Description: pfam03781 Location: 880330-881107 bp Feature: domain Description: pfam03781 Location: 880330-881 1 07 bp Feature: gene Location: 881237-881749 bp Feature: gene Location: 2175564-2175917 bp Ori: APR76558.1 Feature: domain Description: ManC Location: 2175573-2175858 bp Feature: domain Description: ManC Location: 21 75573-21 75858 bp Feature: gene Location: 2175966-2177486 bp Ori: APR76559.1 Feature: domain Description: RsuA Location: 2175972-2176674 bp Feature: domain Description: RsuA Location: 21 75972-21 76674 bp Feature: gene Location: 2178300-2179568 bp Ori: APR76560.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2178543-2179125 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 21 78543-21 791 25 bp Feature: gene Location: 2179671-2180870 bp Ori: APR76561.1 Feature: domain Description: PRK13531 Location: 2179719-2180598 bp Feature: domain Description: PRK1 3531 Location: 21 7971 9-21 80598 bp Feature: gene Location: 2180973-2182580 bp Ori: APR76562.1 Feature: domain Description: DUF2079 Location: 2181207-2182542 bp Feature: domain Description: DUF2079 Location: 21 81 207-21 82542 bp Feature: gene Location: 4595579-4595968 bp Feature: gene Location: 4596117-4596719 bp Ori: APR78575.1 Feature: domain Description: PgsA Location: 4596147-4596615 bp Feature: domain Description: PgsA Location: 45961 47-459661 5 bp Feature: gene Location: 4597083-4598795 bp Ori: APR78576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4597737-4598424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4597737-4598424 bp Feature: gene Location: 4599494-4599616 bp Feature: gene Location: 4599693-4600340 bp Feature: gene Location: 4625880-4626533 bp Ori: APR78604.1 Feature: domain Description: SRPBCC_8 Location: 4626048-4626471 bp Feature: domain Description: SRPBCC_8 Location: 4626048-4626471 bp Feature: gene Location: 4626538-4627707 bp Ori: APR78605.1 Feature: domain Description: FDH_like_1 Location: 4626541-4627705 bp Feature: domain Description: FDH_like_1 Location: 4626541 -4627705 bp Feature: gene Location: 4627891-4628358 bp Ori: APR78606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4628095-4628170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4628095-46281 70 bp Feature: gene Location: 4629023-4629214 bp Ori: APR78607.1 Feature: domain Description: OYE_YqiM_FMN Location: 4629026-4629143 bp Feature: domain Description: OYE_YqiM_FMN Location: 4629026-46291 43 bp Feature: gene Location: 4629421-4629990 bp Ori: APR78608.1 Feature: domain Description: COG3548 Location: 4629424-4629967 bp Feature: domain Description: COG3548 Location: 4629424-4629967 bp Feature: gene Location: 15276460-15277542 bp Ori: APR88025.1 Feature: domain Description: NT_GlnE_GlnD_like Location: 15276550-15276715 bp Feature: domain Description: NT_GlnE_GlnD_like Location: 1 5276550-1 527671 5 bp Feature: gene Location: 15277694-15278122 bp Ori: APR88026.1 Feature: domain Description: CBS_pair_bact_arch Location: 15277718-15278051 bp Feature: domain Description: CBS_pair_bact_arch Location: 1 527771 8-1 5278051 bp Feature: gene Location: 15278181-15280088 bp Ori: APR88027.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15279237-15279855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5279237-1 5279855 bp Feature: gene Location: 15280150-15281079 bp Ori: APR88028.1 Feature: domain Description: FkpA Location: 15280327-15280690 bp Feature: domain Description: FkpA Location: 1 5280327-1 5280690 bp Feature: domain Description: FkpA Location: 15280744-15281077 bp Feature: domain Description: FkpA Location: 1 5280744-1 5281 077 bp Feature: gene Location: 15281127-15281900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Beta-lactamase (pfam00144), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), SWIM (pfam04434), WGR_MMR_like (cd07996), RVT-Retrons, STKc_PknB_like (cd14014), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)
ManC (COG0662), RsuA (COG1187), RVT-G2L4, PRK13531 (regulatory ATPase RavA; Provisional), DUF2079 (pfam09852), PgsA (COG0558), SRPBCC_8 (cd07817), FDH_like_1 (cd08283), OYE_YqiM_FMN (cd02932), COG3548 (Uncharacterized membrane protein )
NT_GlnE_GlnD_like (cd05401), CBS_pair_bact_arch (cd17775), FkpA (COG0545)