myRT

myRT report for GCA_001931675.1_ASM193167v1

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Seq: CP014839.1 Pandoraea thiooxydans strain ATSB16, complete genome (4464185 bp)
Overview 1 RT 1: 98440-103063 bp 2 RT 2: 523946-535100 bp 3 RT 3: 1466872-1473640 bp 4 RT 4: 1633490-1638294 bp 5 RT 5: 3503089-3507469 bp 6 RT 6: 3928003-3933837 bp Neighborhood of RT #1 [98440, 103092] PRK11151 Dps RVT-GII GIIM NrdG2 NRDD Neighborhood of RT #2 [523946, 535567] DEXDc Z1 IS285 RVT-UG5 COG3587 Mod Neighborhood of RT #3 [1466872, 1473708] RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 PRK09579 Neighborhood of RT #4 [1633490, 1638338] RhaT RVT-GII GIIM PRK15092 ManC Neighborhood of RT #5 [3503089, 3507507] DDE_Tnp_ISL3 RVT-GII GIIM gram_neg_porins TauE Neighborhood of RT #6 [3928003, 3933842] hslU PRK05456 RVT-GII GIIM dksA YejR Feature: gene Location: 98440-99384 bp Ori: APR93439.1 Feature: domain Description: PRK11151 Location: 98443-99334 bp Feature: domain Description: PRK1 1 1 51 Location: 98443-99334 bp Feature: gene Location: 99732-100220 bp Ori: APR93440.1 Feature: domain Description: Dps Location: 99762-100218 bp Feature: domain Description: Dps Location: 99762-1 0021 8 bp Feature: gene Location: 100526-102109 bp Ori: APR93441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101042-101657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 042-1 01 657 bp Feature: domain Description: GIIM Note: maturase Location: 101711-101927 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 71 1 -1 01 927 bp Feature: gene Location: 102225-102893 bp Ori: APR93442.1 Feature: domain Description: NrdG2 Location: 102243-102786 bp Feature: domain Description: NrdG2 Location: 1 02243-1 02786 bp Feature: gene Location: 102898-103092 bp Ori: APR93443.1 Feature: domain Description: NRDD Location: 102964-103063 bp Feature: domain Description: NRDD Location: 1 02964-1 03063 bp Feature: gene Location: 523946-526144 bp Ori: APR93843.1 Feature: domain Description: DEXDc Location: 524015-524561 bp Feature: domain Description: DEXDc Location: 52401 5-524561 bp Feature: domain Description: Z1 Location: 524825-525482 bp Feature: domain Description: Z1 Location: 524825-525482 bp Feature: gene Location: 526282-527265 bp Ori: APR93844.1 Feature: domain Description: IS285 Location: 526336-527230 bp Feature: domain Description: IS285 Location: 526336-527230 bp Feature: gene Location: 527458-530466 bp Ori: APR93845.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 527989-528448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 527989-528448 bp Feature: gene Location: 530629-533691 bp Ori: APR93846.1 Feature: domain Description: COG3587 Location: 530632-533683 bp Feature: domain Description: COG3587 Location: 530632-533683 bp Feature: gene Location: 533702-535567 bp Ori: APR93847.1 Feature: domain Description: Mod Location: 533729-535100 bp Feature: domain Description: Mod Location: 533729-5351 00 bp Feature: gene Location: 1466872-1466988 bp Feature: gene Location: 1467000-1467239 bp Feature: gene Location: 1467769-1469148 bp Ori: APR94754.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1468114-1468729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4681 1 4-1 468729 bp Feature: domain Description: GIIM Note: maturase Location: 1468786-1468987 bp Feature: domain Description: GIIM Note: maturase Location: 1 468786-1 468987 bp Feature: gene Location: 1469218-1470474 bp Ori: APR94755.1 Feature: domain Description: Nterm_IS4 Location: 1469272-1469545 bp Feature: domain Description: Nterm_IS4 Location: 1 469272-1 469545 bp Feature: domain Description: DDE_Tnp_1 Location: 1469614-1470280 bp Feature: domain Description: DDE_Tnp_1 Location: 1 46961 4-1 470280 bp Feature: gene Location: 1470607-1473708 bp Ori: APR94756.1 Feature: domain Description: PRK09579 Location: 1470610-1473640 bp Feature: domain Description: PRK09579 Location: 1 47061 0-1 473640 bp Feature: gene Location: 1633490-1634455 bp Ori: APR94929.1 Feature: domain Description: RhaT Location: 1633553-1634399 bp Feature: domain Description: RhaT Location: 1 633553-1 634399 bp Feature: gene Location: 1634537-1634773 bp Feature: gene Location: 1635304-1636887 bp Ori: APR94931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635820-1636435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 635820-1 636435 bp Feature: domain Description: GIIM Note: maturase Location: 1636489-1636705 bp Feature: domain Description: GIIM Note: maturase Location: 1 636489-1 636705 bp Feature: gene Location: 1636945-1637772 bp Ori: APR94932.1 Feature: domain Description: PRK15092 Location: 1636963-1637725 bp Feature: domain Description: PRK1 5092 Location: 1 636963-1 637725 bp Feature: gene Location: 1637955-1638338 bp Ori: APR94933.1 Feature: domain Description: ManC Location: 1638066-1638294 bp Feature: domain Description: ManC Location: 1 638066-1 638294 bp Feature: gene Location: 3503089-3503430 bp Feature: gene Location: 3503466-3503762 bp Ori: APR96756.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 3503469-3503697 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3503469-3503697 bp Feature: gene Location: 3503839-3505218 bp Ori: APR96757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3504184-3504799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35041 84-3504799 bp Feature: domain Description: GIIM Note: maturase Location: 3504856-3505057 bp Feature: domain Description: GIIM Note: maturase Location: 3504856-3505057 bp Feature: gene Location: 3505688-3506779 bp Ori: APR96758.1 Feature: domain Description: gram_neg_porins Location: 3505760-3506777 bp Feature: domain Description: gram_neg_porins Location: 3505760-3506777 bp Feature: gene Location: 3506779-3507507 bp Ori: APR96759.1 Feature: domain Description: TauE Location: 3506812-3507469 bp Feature: domain Description: TauE Location: 350681 2-3507469 bp Feature: gene Location: 3928003-3929358 bp Ori: APR97211.1 Feature: domain Description: hslU Location: 3928006-3929356 bp Feature: domain Description: hslU Location: 3928006-3929356 bp Feature: gene Location: 3929380-3929916 bp Ori: APR97212.1 Feature: domain Description: PRK05456 Location: 3929398-3929911 bp Feature: domain Description: PRK05456 Location: 3929398-392991 1 bp Feature: gene Location: 3930139-3931518 bp Ori: APR97213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3930484-3931099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3930484-3931 099 bp Feature: domain Description: GIIM Note: maturase Location: 3931156-3931357 bp Feature: domain Description: GIIM Note: maturase Location: 3931 1 56-3931 357 bp Feature: gene Location: 3932001-3932435 bp Ori: APR97214.1 Feature: domain Description: dksA Location: 3932079-3932403 bp Feature: domain Description: dksA Location: 3932079-3932403 bp Feature: gene Location: 3932772-3933842 bp Ori: APR97215.1 Feature: domain Description: YejR Location: 3932817-3933837 bp Feature: domain Description: YejR Location: 393281 7-3933837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11151 (DNA-binding transcriptional regulator OxyR; Provisional), Dps (COG0783), RVT-GII, GIIM (pfam08388), NrdG2 (TIGR02495), NRDD (pfam13597), DEXDc (smart00487), Z1 (pfam10593), IS285 (COG3328), RVT-UG5
COG3587 (Restriction endonuclease ), Mod (COG2189), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), PRK09579 (multidrug efflux RND transporter permease subunit), RhaT (TIGR00776), PRK15092 (DNA-binding transcriptional repressor LrhA; Provisional), ManC (COG0662), DDE_Tnp_ISL3 (pfam01610), gram_neg_porins (cd00342)
TauE (pfam01925), hslU (TIGR00390), PRK05456 (ATP-dependent protease subunit HslV), dksA (TIGR02420), YejR (COG0523)