myRT

myRT report for GCA_001932595.1_ASM193259v1

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Seq: CP013757.1 Piscirickettsia salmonis strain AY6492A, complete genome (3042741 bp)
Overview 1 RT 1: 92689-96043 bp 2 RT 2: 2005439-2008112 bp 3 RT 3: 2224391-2227359 bp Neighborhood of RT #1 [92689, 96063] HATPase_c_2 Zn_Tnp_IS91 RVT-GII MDR_like_2 Neighborhood of RT #2 [2005439, 2008112] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #3 [2224391, 2227367] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 InsE Feature: gene Location: 92689-93009 bp Ori: APS43006.1 Feature: domain Description: HATPase_c_2 Location: 92713-92992 bp Feature: domain Description: HATPase_c_2 Location: 9271 3-92992 bp Feature: gene Location: 93106-93606 bp Ori: APS43007.1 Feature: domain Description: Zn_Tnp_IS91 Location: 93178-93451 bp Feature: domain Description: Zn_Tnp_IS91 Location: 931 78-93451 bp Feature: gene Location: 93662-94432 bp Ori: APS43008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93668-94025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93668-94025 bp Feature: gene Location: 94728-94922 bp Feature: gene Location: 95101-96063 bp Ori: APS43010.1 Feature: domain Description: MDR_like_2 Location: 95104-96043 bp Feature: domain Description: MDR_like_2 Location: 951 04-96043 bp Feature: gene Location: 2005439-2005903 bp Ori: APS44734.1 Feature: domain Description: DDE_3 Location: 2005442-2005826 bp Feature: domain Description: DDE_3 Location: 2005442-2005826 bp Feature: gene Location: 2005960-2006325 bp Ori: APS44735.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2005975-2006314 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2005975-200631 4 bp Feature: gene Location: 2006443-2007045 bp Ori: APS44736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2006449-2006641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2006449-2006641 bp Feature: gene Location: 2007101-2007499 bp Ori: APS44737.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2007113-2007344 bp Feature: domain Description: Zn_Tnp_IS91 Location: 20071 1 3-2007344 bp Feature: gene Location: 2007585-2008112 bp Feature: gene Location: 2224391-2224756 bp Ori: APS44921.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2224406-2224745 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2224406-2224745 bp Feature: gene Location: 2224778-2225107 bp Ori: APS44922.1 Feature: domain Description: Y2_Tnp Location: 2224865-2225012 bp Feature: domain Description: Y2_Tnp Location: 2224865-222501 2 bp Feature: gene Location: 2225516-2226205 bp Ori: APS44923.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225798-2226191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225798-22261 91 bp Feature: gene Location: 2226214-2227026 bp Ori: APS44924.1 Feature: domain Description: PHA02517 Location: 2226229-2227012 bp Feature: domain Description: PHA0251 7 Location: 2226229-222701 2 bp Feature: gene Location: 2227074-2227367 bp Ori: APS44925.1 Feature: domain Description: InsE Location: 2227080-2227359 bp Feature: domain Description: InsE Location: 2227080-2227359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_2 (pfam13581), Zn_Tnp_IS91 (pfam14319), RVT-GII, MDR_like_2 (cd05289), DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: CP013761.1 Piscirickettsia salmonis strain AY6492A plasmid p4PS1, complete sequence (158156 bp)
Overview 1 RT 1: 10477-14806 bp 2 RT 2: 29987-33083 bp 3 RT 3: 85747-89488 bp 4 RT 4: 103932-107808 bp Neighborhood of RT #1 [10477, 14865] Rve Zn_Tnp_IS91 RVT-GII Rve Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [29987, 33097] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #3 [85747, 89502] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #4 [103932, 107849] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 10477-11211 bp Ori: APS46003.1 Feature: domain Description: Rve Location: 10519-11137 bp Feature: domain Description: Rve Location: 10519-11137 bp Feature: gene Location: 11870-12202 bp Ori: APS46004.1 Feature: domain Description: Zn_Tnp_IS91 Location: 11873-12047 bp Feature: domain Description: Zn_Tnp_IS91 Location: 11873-12 047 bp Feature: gene Location: 12464-13054 bp Ori: APS46005.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12467-12875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 467-12 875 bp Feature: gene Location: 13184-13918 bp Ori: APS46006.1 Feature: domain Description: Rve Location: 13226-13844 bp Feature: domain Description: Rve Location: 132 2 6-13844 bp Feature: gene Location: 14140-14865 bp Ori: APS46007.1 Feature: domain Description: Zn_Tnp_IS91 Location: 14152-14383 bp Feature: domain Description: Zn_Tnp_IS91 Location: 14152 -14383 bp Feature: domain Description: Y2_Tnp Location: 14497-14806 bp Feature: domain Description: Y2 _Tnp Location: 14497-14806 bp Feature: gene Location: 29987-30472 bp Feature: domain Description: PHA02517 Location: 29999-30470 bp Feature: domain Description: PHA02 517 Location: 2 9999-30470 bp Feature: gene Location: 30589-30882 bp Ori: APS46019.1 Feature: domain Description: InsE Location: 30595-30874 bp Feature: domain Description: InsE Location: 30595-30874 bp Feature: gene Location: 30948-32219 bp Ori: APS46020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31134-31815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31134-31815 bp Feature: gene Location: 32275-32673 bp Ori: APS46021.1 Feature: domain Description: Zn_Tnp_IS91 Location: 32287-32518 bp Feature: domain Description: Zn_Tnp_IS91 Location: 32 2 87-32 518 bp Feature: gene Location: 32729-33097 bp Ori: APS46022.1 Feature: domain Description: major_cap_HK97 Location: 32822-33083 bp Feature: domain Description: major_cap_HK97 Location: 32 82 2 -33083 bp Feature: gene Location: 85747-86211 bp Ori: APS46087.1 Feature: domain Description: HTH_3 Location: 85756-85897 bp Feature: domain Description: HTH_3 Location: 85756-85897 bp Feature: gene Location: 86943-87296 bp Feature: domain Description: Y2_Tnp Location: 86949-87294 bp Feature: domain Description: Y2 _Tnp Location: 86949-872 94 bp Feature: gene Location: 87622-88329 bp Ori: APS46088.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87904-88294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87904-882 94 bp Feature: gene Location: 88316-88642 bp Ori: APS46162.1 Feature: domain Description: InsE Location: 88361-88634 bp Feature: domain Description: InsE Location: 88361-88634 bp Feature: gene Location: 88690-89502 bp Ori: APS46089.1 Feature: domain Description: PHA02517 Location: 88705-89488 bp Feature: domain Description: PHA02 517 Location: 88705-89488 bp Feature: gene Location: 103932-104156 bp Ori: APS46166.1 Feature: domain Description: DDE_3 Location: 103935-104079 bp Feature: domain Description: DDE_3 Location: 103935-104079 bp Feature: gene Location: 104160-104414 bp Ori: APS46102.1 Feature: domain Description: InsE Location: 104166-104412 bp Feature: domain Description: InsE Location: 104166-104412 bp Feature: gene Location: 104374-105501 bp Ori: APS46103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104656-105334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104656-105334 bp Feature: gene Location: 106285-106635 bp Feature: domain Description: Y2_Tnp Location: 106288-106633 bp Feature: domain Description: Y2 _Tnp Location: 1062 88-106633 bp Feature: gene Location: 107259-107849 bp Ori: APS46104.1 Feature: domain Description: Phage_integrase Location: 107286-107808 bp Feature: domain Description: Phage_integrase Location: 1072 86-107808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), DDE_3 (pfam13358), Phage_integrase (pfam00589)