myRT

myRT report for GCA_001932635.1_ASM193263v1

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Seq: CP009769.1 Pectobacterium carotovorum subsp. brasiliense strain BC1, complete genome (4920350 bp)
Overview 1 RT 1: 1766156-1771230 bp 2 RT 2: 2860212-2868122 bp 3 RT 3: 3370790-3378453 bp 4 RT 4: 4910777-4917255 bp Neighborhood of RT #1 [1766156, 1771265] LT_VirB1_like RVT-Retrons C4_traR_proteo DUF2857 Neighborhood of RT #2 [2860212, 2868163] VI_effect_Hcp1 HTH_35 RVT-UG5 PRK10403 PRK10935 Neighborhood of RT #3 [3370790, 3378453] RVT-Retrons HTH_XRE Neighborhood of RT #4 [4910777, 4917257] PRK09726 HipA_Ec_like RVT-Retrons trmE Feature: gene Location: 1766156-1766821 bp Ori: APS29606.1 Feature: domain Description: LT_VirB1_like Location: 1766189-1766624 bp Feature: domain Description: LT_VirB1 _like Location: 1 7661 89-1 766624 bp Feature: gene Location: 1766895-1767116 bp Feature: gene Location: 1768943-1769914 bp Ori: APS29608.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1769045-1769630 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 769045-1 769630 bp Feature: gene Location: 1770482-1770691 bp Ori: APS29609.1 Feature: domain Description: C4_traR_proteo Location: 1770491-1770677 bp Feature: domain Description: C4_traR_proteo Location: 1 770491 -1 770677 bp Feature: gene Location: 1770681-1771265 bp Ori: APS29610.1 Feature: domain Description: DUF2857 Location: 1770699-1771230 bp Feature: domain Description: DUF2857 Location: 1 770699-1 771 230 bp Feature: gene Location: 2860212-2860730 bp Ori: APS30490.1 Feature: domain Description: VI_effect_Hcp1 Location: 2860221-2860716 bp Feature: domain Description: VI_effect_Hcp1 Location: 2860221 -286071 6 bp Feature: gene Location: 2861347-2861601 bp Ori: APS30491.1 Feature: domain Description: HTH_35 Location: 2861368-2861587 bp Feature: domain Description: HTH_35 Location: 2861 368-2861 587 bp Feature: gene Location: 2862589-2865543 bp Ori: APS30492.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2863084-2863549 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2863084-2863549 bp Feature: gene Location: 2865726-2866358 bp Ori: APS30493.1 Feature: domain Description: PRK10403 Location: 2865729-2866356 bp Feature: domain Description: PRK1 0403 Location: 2865729-2866356 bp Feature: gene Location: 2866445-2868163 bp Ori: APS30494.1 Feature: domain Description: PRK10935 Location: 2866448-2868122 bp Feature: domain Description: PRK1 0935 Location: 2866448-28681 22 bp Feature: gene Location: 3370790-3372382 bp Feature: gene Location: 3372990-3376832 bp Feature: gene Location: 3376921-3377892 bp Ori: APS30905.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3377074-3377629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3377074-3377629 bp Feature: gene Location: 3377873-3378163 bp Ori: APS30906.1 Feature: domain Description: HTH_XRE Location: 3377885-3378050 bp Feature: domain Description: HTH_XRE Location: 3377885-3378050 bp Feature: gene Location: 3378214-3378453 bp Feature: gene Location: 4910777-4911043 bp Ori: APS32133.1 Feature: domain Description: PRK09726 Location: 4910780-4910984 bp Feature: domain Description: PRK09726 Location: 491 0780-491 0984 bp Feature: gene Location: 4911043-4912362 bp Ori: APS32134.1 Feature: domain Description: HipA_Ec_like Location: 4911106-4912345 bp Feature: domain Description: HipA_Ec_like Location: 491 1 1 06-491 2345 bp Feature: gene Location: 4912865-4913800 bp Ori: APS32135.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4912973-4913561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 491 2973-491 3561 bp Feature: gene Location: 4913800-4914762 bp Feature: gene Location: 4915893-4917257 bp Ori: APS32137.1 Gene: trmE Feature: domain Description: trmE Location: 4915896-4917255 bp Feature: domain Description: trmE Location: 491 5896-491 7255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LT_VirB1_like, RVT-Retrons, C4_traR_proteo (TIGR02419), DUF2857 (pfam11198), VI_effect_Hcp1 (TIGR03344), HTH_35 (pfam13693), RVT-UG5, PRK10403 (nitrate/nitrite response regulator protein NarP), PRK10935 (nitrate/nitrite two-component system sensor histidine kinase NarQ), HTH_XRE (smart00530)
PRK09726 (type II toxin-antitoxin system antitoxin HipB), HipA_Ec_like (cd17808), trmE (PRK05291)