myRT

myRT report for GCA_001932675.1_ASM193267v1

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Seq: CP012872.1 Salegentibacter sp. T436, complete genome (4086550 bp)
Overview 1 RT 1: 650209-658102 bp 2 RT 2: 867046-873140 bp 3 RT 3: 879347-886014 bp 4 RT 4: 1379681-1386716 bp 5 RT 5: 1489634-1493922 bp 6 RT 6: 1968137-1974330 bp 7 RT 7: 2033173-2039658 bp 8 RT 8: 2404901-2412175 bp 9 RT 9: 2567846-2573514 bp 10 RT 10: 2901007-2906708 bp 11 RT 11: 2957208-2963813 bp 12 RT 12: 3069892-3074606 bp 13 RT 13: 3807457-3813405 bp Neighborhood of RT #1 [650209, 658113] AcrB DUF4437 RVT-GII GIIM COG3666 DDE_Tnp_1_6 Neighborhood of RT #2 [867046, 873145] ribokinase_group_C PurF PurF RVT-GII GIIM SodA Neighborhood of RT #3 [879347, 886115] COG3893 PDDEXK_1 KOG4667 RVT-GII GIIM Acetyltransf_1 Neighborhood of RT #4 [1379681, 1386979] LVIVD LVIVD LVIVD RVT-GII GIIM PRK07561 PRK07561 Toprim_C_rpt Toprim_C_rpt PRK07561 Formimidoylglutamase Neighborhood of RT #5 [1489634, 1493922] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #6 [1968137, 1974347] M20_dipept_like RVT-GII GIIM zf-ISL3 AraC_binding HTH_ARAC Neighborhood of RT #7 [2033173, 2039729] GlnA3 RVT-GII GIIM Curlin_rpt Curlin_rpt Curlin_rpt Curlin_rpt Curlin_rpt Curlin_rpt Curlin_rpt Neighborhood of RT #8 [2404901, 2412175] TSP3 RVT-GII GIIM KOG3714 Neighborhood of RT #9 [2567846, 2573744] TPR_16 TPR TPR_2 TPR RVT-GII GIIM NhaP CheY sensory_box Neighborhood of RT #10 [2901007, 2906708] OmpR KdpD KdpD RVT-GII GIIM TPR_19 TPR_19 VCBS VCBS VCBS FG-GAP VCBS UnbV_ASPIC Neighborhood of RT #11 [2957208, 2963839] SLC13_permease GT4_PimA-like RVT-GII GIIM PRK09084 Neighborhood of RT #12 [3069892, 3074614] RVT-GII GIIM RadC Neighborhood of RT #13 [3807457, 3813405] PpiB FkpA YtcJ RVT-GII GIIM Feature: gene Location: 650209-653682 bp Ori: APS37871.1 Feature: domain Description: AcrB Location: 650233-653617 bp Feature: domain Description: AcrB Location: 650233-65361 7 bp Feature: gene Location: 653835-654299 bp Ori: APS37872.1 Feature: domain Description: DUF4437 Location: 653952-654255 bp Feature: domain Description: DUF4437 Location: 653952-654255 bp Feature: gene Location: 654411-655703 bp Ori: APS37873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654630-655248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654630-655248 bp Feature: domain Description: GIIM Note: maturase Location: 655293-655524 bp Feature: domain Description: GIIM Note: maturase Location: 655293-655524 bp Feature: gene Location: 656232-656444 bp Feature: gene Location: 656581-658113 bp Ori: APS37875.1 Feature: domain Description: COG3666 Location: 656602-657067 bp Feature: domain Description: COG3666 Location: 656602-657067 bp Feature: domain Description: DDE_Tnp_1_6 Location: 657730-658102 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 657730-6581 02 bp Feature: gene Location: 867046-867969 bp Ori: APS38060.1 Feature: domain Description: ribokinase_group_C Location: 867058-867886 bp Feature: domain Description: ribokinase_group_C Location: 867058-867886 bp Feature: gene Location: 868033-869931 bp Ori: APS38061.1 Feature: domain Description: PurF Location: 868357-869149 bp Feature: domain Description: PurF Location: 868357-8691 49 bp Feature: domain Description: PurF Location: 869305-869587 bp Feature: domain Description: PurF Location: 869305-869587 bp Feature: gene Location: 870436-871728 bp Ori: APS38062.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870655-871273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870655-871 273 bp Feature: domain Description: GIIM Note: maturase Location: 871318-871549 bp Feature: domain Description: GIIM Note: maturase Location: 871 31 8-871 549 bp Feature: gene Location: 872257-872469 bp Feature: gene Location: 872537-873145 bp Ori: APS38064.1 Feature: domain Description: SodA Location: 872540-873140 bp Feature: domain Description: SodA Location: 872540-8731 40 bp Feature: gene Location: 879347-882082 bp Ori: APS38068.1 Feature: domain Description: COG3893 Location: 880841-881123 bp Feature: domain Description: COG3893 Location: 880841 -881 1 23 bp Feature: domain Description: PDDEXK_1 Location: 881261-882071 bp Feature: domain Description: PDDEXK_1 Location: 881 261 -882071 bp Feature: gene Location: 882090-882992 bp Ori: APS38069.1 Feature: domain Description: KOG4667 Location: 882108-882858 bp Feature: domain Description: KOG4667 Location: 8821 08-882858 bp Feature: gene Location: 883372-884664 bp Ori: APS38070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883591-884209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883591 -884209 bp Feature: domain Description: GIIM Note: maturase Location: 884254-884485 bp Feature: domain Description: GIIM Note: maturase Location: 884254-884485 bp Feature: gene Location: 885193-885405 bp Feature: gene Location: 885594-886115 bp Ori: APS38072.1 Feature: domain Description: Acetyltransf_1 Location: 885693-886014 bp Feature: domain Description: Acetyltransf_1 Location: 885693-88601 4 bp Feature: gene Location: 1379681-1380934 bp Ori: APS38492.1 Feature: domain Description: LVIVD Location: 1379861-1380086 bp Feature: domain Description: LVIVD Location: 1 379861 -1 380086 bp Feature: domain Description: LVIVD Location: 1380314-1380599 bp Feature: domain Description: LVIVD Location: 1 38031 4-1 380599 bp Feature: domain Description: LVIVD Location: 1380623-1380860 bp Feature: domain Description: LVIVD Location: 1 380623-1 380860 bp Feature: gene Location: 1380998-1381210 bp Feature: gene Location: 1381739-1383031 bp Ori: APS38494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1381958-1382576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 381 958-1 382576 bp Feature: domain Description: GIIM Note: maturase Location: 1382621-1382852 bp Feature: domain Description: GIIM Note: maturase Location: 1 382621 -1 382852 bp Feature: gene Location: 1383266-1385815 bp Ori: APS38495.1 Feature: domain Description: PRK07561 Location: 1383275-1384706 bp Feature: domain Description: PRK07561 Location: 1 383275-1 384706 bp Feature: domain Description: PRK07561 Location: 1384793-1385006 bp Feature: domain Description: PRK07561 Location: 1 384793-1 385006 bp Feature: domain Description: Toprim_C_rpt Location: 1385045-1385225 bp Feature: domain Description: Toprim_C_rpt Location: 1 385045-1 385225 bp Feature: domain Description: Toprim_C_rpt Location: 1385234-1385372 bp Feature: domain Description: Toprim_C_rpt Location: 1 385234-1 385372 bp Feature: domain Description: PRK07561 Location: 1385399-1385807 bp Feature: domain Description: PRK07561 Location: 1 385399-1 385807 bp Feature: gene Location: 1385819-1386979 bp Ori: APS38496.1 Feature: domain Description: Formimidoylglutamase Location: 1386014-1386716 bp Feature: domain Description: Formimidoylglutamase Location: 1 38601 4-1 38671 6 bp Feature: gene Location: 1489634-1489987 bp Ori: APS38593.1 Feature: domain Description: TnpB_IS66 Location: 1489664-1489955 bp Feature: domain Description: TnpB_IS66 Location: 1 489664-1 489955 bp Feature: gene Location: 1490030-1490749 bp Ori: APS38594.1 Feature: domain Description: COG3436 Location: 1490276-1490726 bp Feature: domain Description: COG3436 Location: 1 490276-1 490726 bp Feature: gene Location: 1491261-1492499 bp Ori: APS38595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491474-1492128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 491 474-1 4921 28 bp Feature: domain Description: GIIM Note: maturase Location: 1492206-1492425 bp Feature: domain Description: GIIM Note: maturase Location: 1 492206-1 492425 bp Feature: gene Location: 1492593-1493363 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1492596-1493217 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 492596-1 49321 7 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1493238-1493346 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 493238-1 493346 bp Feature: gene Location: 1493413-1493922 bp Feature: gene Location: 1968137-1969528 bp Ori: APS40761.1 Feature: domain Description: M20_dipept_like Location: 1968185-1969502 bp Feature: domain Description: M20_dipept_like Location: 1 9681 85-1 969502 bp Feature: gene Location: 1969769-1969981 bp Feature: gene Location: 1970510-1971802 bp Ori: APS38942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1970729-1971347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 970729-1 971 347 bp Feature: domain Description: GIIM Note: maturase Location: 1971392-1971623 bp Feature: domain Description: GIIM Note: maturase Location: 1 971 392-1 971 623 bp Feature: gene Location: 1972950-1973303 bp Ori: APS40762.1 Feature: domain Description: zf-ISL3 Location: 1973112-1973193 bp Feature: domain Description: zf-ISL3 Location: 1 9731 1 2-1 9731 93 bp Feature: gene Location: 1973508-1974347 bp Ori: APS38943.1 Feature: domain Description: AraC_binding Location: 1973583-1973790 bp Feature: domain Description: AraC_binding Location: 1 973583-1 973790 bp Feature: domain Description: HTH_ARAC Location: 1974081-1974330 bp Feature: domain Description: HTH_ARAC Location: 1 974081 -1 974330 bp Feature: gene Location: 2033173-2035359 bp Ori: APS38983.1 Feature: domain Description: GlnA3 Location: 2033206-2035354 bp Feature: domain Description: GlnA3 Location: 2033206-2035354 bp Feature: gene Location: 2035420-2035632 bp Feature: gene Location: 2036161-2037453 bp Ori: APS38985.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036380-2036998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036380-2036998 bp Feature: domain Description: GIIM Note: maturase Location: 2037043-2037274 bp Feature: domain Description: GIIM Note: maturase Location: 2037043-2037274 bp Feature: gene Location: 2038390-2039175 bp Ori: APS38986.1 Feature: domain Description: Curlin_rpt Location: 2038453-2038513 bp Feature: domain Description: Curlin_rpt Location: 2038453-203851 3 bp Feature: domain Description: Curlin_rpt Location: 2038546-2038627 bp Feature: domain Description: Curlin_rpt Location: 2038546-2038627 bp Feature: domain Description: Curlin_rpt Location: 2038687-2038819 bp Feature: domain Description: Curlin_rpt Location: 2038687-203881 9 bp Feature: domain Description: Curlin_rpt Location: 2038858-2038957 bp Feature: domain Description: Curlin_rpt Location: 2038858-2038957 bp Feature: domain Description: Curlin_rpt Location: 2039050-2039122 bp Feature: domain Description: Curlin_rpt Location: 2039050-20391 22 bp Feature: gene Location: 2039244-2039729 bp Ori: APS38987.1 Feature: domain Description: Curlin_rpt Location: 2039394-2039502 bp Feature: domain Description: Curlin_rpt Location: 2039394-2039502 bp Feature: domain Description: Curlin_rpt Location: 2039541-2039658 bp Feature: domain Description: Curlin_rpt Location: 2039541 -2039658 bp Feature: gene Location: 2404901-2406535 bp Ori: APS39271.1 Feature: domain Description: TSP3 Location: 2405897-2406056 bp Feature: domain Description: TSP3 Location: 2405897-2406056 bp Feature: gene Location: 2406661-2406873 bp Feature: gene Location: 2407402-2408694 bp Ori: APS39273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407621-2408239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407621 -2408239 bp Feature: domain Description: GIIM Note: maturase Location: 2408284-2408515 bp Feature: domain Description: GIIM Note: maturase Location: 2408284-240851 5 bp Feature: gene Location: 2409099-2410127 bp Ori: APS39274.1 Feature: domain Description: KOG3714 Location: 2409405-2409996 bp Feature: domain Description: KOG371 4 Location: 2409405-2409996 bp Feature: gene Location: 2410721-2412175 bp Feature: gene Location: 2567846-2569084 bp Ori: APS40786.1 Feature: domain Description: TPR_16 Location: 2567927-2568140 bp Feature: domain Description: TPR_1 6 Location: 2567927-25681 40 bp Feature: domain Description: TPR Location: 2568281-2568662 bp Feature: domain Description: TPR Location: 2568281 -2568662 bp Feature: domain Description: TPR_2 Location: 2568713-2568806 bp Feature: domain Description: TPR_2 Location: 256871 3-2568806 bp Feature: domain Description: TPR Location: 2568938-2569064 bp Feature: domain Description: TPR Location: 2568938-2569064 bp Feature: gene Location: 2569137-2569358 bp Feature: gene Location: 2569897-2571189 bp Ori: APS39403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2570116-2570734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25701 1 6-2570734 bp Feature: domain Description: GIIM Note: maturase Location: 2570779-2571010 bp Feature: domain Description: GIIM Note: maturase Location: 2570779-2571 01 0 bp Feature: gene Location: 2571486-2572706 bp Ori: APS39404.1 Feature: domain Description: NhaP Location: 2571492-2572680 bp Feature: domain Description: NhaP Location: 2571 492-2572680 bp Feature: gene Location: 2572743-2573744 bp Ori: APS39405.1 Feature: domain Description: CheY Location: 2572758-2573109 bp Feature: domain Description: CheY Location: 2572758-25731 09 bp Feature: domain Description: sensory_box Location: 2573154-2573514 bp Feature: domain Description: sensory_box Location: 25731 54-257351 4 bp Feature: gene Location: 2901007-2901684 bp Ori: APS39679.1 Feature: domain Description: OmpR Location: 2901022-2901682 bp Feature: domain Description: OmpR Location: 2901 022-2901 682 bp Feature: gene Location: 2901677-2902705 bp Ori: APS40802.1 Feature: domain Description: KdpD Location: 2901689-2902007 bp Feature: domain Description: KdpD Location: 2901 689-2902007 bp Feature: domain Description: KdpD Location: 2902010-2902691 bp Feature: domain Description: KdpD Location: 290201 0-2902691 bp Feature: gene Location: 2903180-2904031 bp Ori: APS39680.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903216-2903765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290321 6-2903765 bp Feature: domain Description: GIIM Note: maturase Location: 2903849-2904002 bp Feature: domain Description: GIIM Note: maturase Location: 2903849-2904002 bp Feature: gene Location: 2904221-2906356 bp Ori: APS39681.1 Feature: domain Description: TPR_19 Location: 2904302-2904434 bp Feature: domain Description: TPR_1 9 Location: 2904302-2904434 bp Feature: domain Description: TPR_19 Location: 2904623-2904725 bp Feature: domain Description: TPR_1 9 Location: 2904623-2904725 bp Feature: domain Description: VCBS Location: 2904857-2905049 bp Feature: domain Description: VCBS Location: 2904857-2905049 bp Feature: domain Description: VCBS Location: 2905079-2905223 bp Feature: domain Description: VCBS Location: 2905079-2905223 bp Feature: domain Description: VCBS Location: 2905373-2905580 bp Feature: domain Description: VCBS Location: 2905373-2905580 bp Feature: domain Description: FG-GAP Location: 2905760-2905799 bp Feature: domain Description: FG-GAP Location: 2905760-2905799 bp Feature: domain Description: VCBS Location: 2905835-2905967 bp Feature: domain Description: VCBS Location: 2905835-2905967 bp Feature: domain Description: UnbV_ASPIC Location: 2906087-2906297 bp Feature: domain Description: UnbV_ASPIC Location: 2906087-2906297 bp Feature: gene Location: 2906487-2906708 bp Feature: gene Location: 2957208-2959019 bp Ori: APS39719.1 Feature: domain Description: SLC13_permease Location: 2957238-2959002 bp Feature: domain Description: SLC1 3_permease Location: 2957238-2959002 bp Feature: gene Location: 2959062-2960306 bp Ori: APS39720.1 Feature: domain Description: GT4_PimA-like Location: 2959077-2960163 bp Feature: domain Description: GT4_PimA-like Location: 2959077-29601 63 bp Feature: gene Location: 2960386-2961678 bp Ori: APS39721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960605-2961223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960605-2961 223 bp Feature: domain Description: GIIM Note: maturase Location: 2961268-2961499 bp Feature: domain Description: GIIM Note: maturase Location: 2961 268-2961 499 bp Feature: gene Location: 2962207-2962419 bp Feature: gene Location: 2962502-2963839 bp Ori: APS39723.1 Feature: domain Description: PRK09084 Location: 2962505-2963813 bp Feature: domain Description: PRK09084 Location: 2962505-296381 3 bp Feature: gene Location: 3069892-3070923 bp Feature: gene Location: 3070935-3071336 bp Feature: gene Location: 3072063-3073355 bp Ori: APS39821.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072282-3072900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072282-3072900 bp Feature: domain Description: GIIM Note: maturase Location: 3072945-3073176 bp Feature: domain Description: GIIM Note: maturase Location: 3072945-30731 76 bp Feature: gene Location: 3073884-3074096 bp Feature: gene Location: 3074165-3074614 bp Ori: APS39823.1 Feature: domain Description: RadC Location: 3074240-3074606 bp Feature: domain Description: RadC Location: 3074240-3074606 bp Feature: gene Location: 3807457-3808389 bp Ori: APS40450.1 Feature: domain Description: PpiB Location: 3807484-3807916 bp Feature: domain Description: PpiB Location: 3807484-380791 6 bp Feature: domain Description: FkpA Location: 3807931-3808387 bp Feature: domain Description: FkpA Location: 3807931 -3808387 bp Feature: gene Location: 3808437-3810065 bp Ori: APS40451.1 Feature: domain Description: YtcJ Location: 3808506-3810063 bp Feature: domain Description: YtcJ Location: 3808506-381 0063 bp Feature: gene Location: 3810183-3811475 bp Ori: APS40452.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3810402-3811020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 0402-381 1 020 bp Feature: domain Description: GIIM Note: maturase Location: 3811065-3811296 bp Feature: domain Description: GIIM Note: maturase Location: 381 1 065-381 1 296 bp Feature: gene Location: 3812004-3812216 bp Feature: gene Location: 3812278-3813405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrB (COG0841), DUF4437 (pfam14499), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), ribokinase_group_C (cd01946), PurF (COG0034), SodA (COG0605), COG3893 (Inactivated superfamily I helicase )
PDDEXK_1 (pfam12705), KOG4667 (KOG4667, Predicted esterase ), Acetyltransf_1 (pfam00583), LVIVD (sd00042), PRK07561 (DNA topoisomerase I subunit omega; Validated), Toprim_C_rpt (pfam13368), Formimidoylglutamase (cd09988), TnpB_IS66 (pfam05717), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), M20_dipept_like (cd05680), zf-ISL3 (pfam14690), AraC_binding (pfam02311), HTH_ARAC (smart00342), GlnA3 (COG3968), Curlin_rpt (pfam07012), TSP3 (sd00002), KOG3714 (KOG3714, Meprin A metalloprotease ), TPR_16 (pfam13432)
TPR (smart00028), TPR_2 (pfam07719), NhaP (COG0025), CheY (COG0784), sensory_box (TIGR00229), OmpR (COG0745), KdpD (pfam02702), TPR_19 (pfam14559), VCBS (pfam13517), FG-GAP (pfam01839)
UnbV_ASPIC (pfam07593), SLC13_permease (cd01115), GT4_PimA-like (cd03801), PRK09084 (aspartate kinase III; Validated), RadC (pfam04002), PpiB (COG0652), FkpA (COG0545), YtcJ (COG1574)