myRT

myRT report for GCA_001932735.1_ASM193273v1

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Seq: CP013763.1 Piscirickettsia salmonis strain PM21567A plasmid p1PS2, complete sequence (120730 bp)
Overview 1 RT 1: 4743-9548 bp 2 RT 2: 70404-74244 bp 3 RT 3: 88751-92192 bp Neighborhood of RT #1 [4743, 9622] Rve RVT-GII Zn_Tnp_IS91 Rve Neighborhood of RT #2 [70404, 74321] Phage_integrase Y2_Tnp RVT-GII InsE DDE_3 Neighborhood of RT #3 [88751, 92506] PHA02517 InsE RVT-GII Y2_Tnp HTH_3 Feature: gene Location: 4743-5477 bp Feature: gene Location: 6180-6914 bp Ori: APS49063.1 Feature: domain Description: Rve Location: 6222-6840 bp Feature: domain Description: Rve Location: 6222-6840 bp Feature: gene Location: 7044-7634 bp Ori: APS49064.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7047-7455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7047-7455 bp Feature: gene Location: 7896-8396 bp Ori: APS49065.1 Feature: domain Description: Zn_Tnp_IS91 Location: 7968-8241 bp Feature: domain Description: Zn_Tnp_IS91 Location: 7968-8241 bp Feature: gene Location: 8888-9622 bp Ori: APS49066.1 Feature: domain Description: Rve Location: 8930-9548 bp Feature: domain Description: Rve Location: 8930-9548 bp Feature: gene Location: 70404-70994 bp Ori: APS49133.1 Feature: domain Description: Phage_integrase Location: 70431-70953 bp Feature: domain Description: Phage_integrase Location: 70431 -70953 bp Feature: gene Location: 71618-71968 bp Feature: domain Description: Y2_Tnp Location: 71621-71966 bp Feature: domain Description: Y2_Tnp Location: 71 621 -71 966 bp Feature: gene Location: 72752-73879 bp Ori: APS49134.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73034-73712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73034-7371 2 bp Feature: gene Location: 73839-74093 bp Ori: APS49135.1 Feature: domain Description: InsE Location: 73845-74091 bp Feature: domain Description: InsE Location: 73845-74091 bp Feature: gene Location: 74097-74321 bp Ori: APS49198.1 Feature: domain Description: DDE_3 Location: 74100-74244 bp Feature: domain Description: DDE_3 Location: 741 00-74244 bp Feature: gene Location: 88751-89563 bp Ori: APS49149.1 Feature: domain Description: PHA02517 Location: 88766-89549 bp Feature: domain Description: PHA0251 7 Location: 88766-89549 bp Feature: gene Location: 89611-89937 bp Ori: APS49202.1 Feature: domain Description: InsE Location: 89656-89929 bp Feature: domain Description: InsE Location: 89656-89929 bp Feature: gene Location: 89924-90631 bp Ori: APS49150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90206-90596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90206-90596 bp Feature: gene Location: 90957-91310 bp Feature: domain Description: Y2_Tnp Location: 90963-91308 bp Feature: domain Description: Y2_Tnp Location: 90963-91 308 bp Feature: gene Location: 92042-92506 bp Ori: APS49151.1 Feature: domain Description: HTH_3 Location: 92051-92192 bp Feature: domain Description: HTH_3 Location: 92051 -921 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589), Y2_Tnp (pfam04986), InsE (COG2963), DDE_3 (pfam13358), PHA02517 (putative transposase OrfB; Reviewed), HTH_3 (pfam01381)

Seq: CP013762.1 Piscirickettsia salmonis strain PM21567A, complete genome (3042830 bp)
Overview 1 RT 1: 223219-226573 bp 2 RT 2: 2136063-2138736 bp 3 RT 3: 2355015-2358381 bp Neighborhood of RT #1 [223219, 226593] HATPase_c_2 Zn_Tnp_IS91 RVT-GII MDR_like_2 Neighborhood of RT #2 [2136063, 2138736] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #3 [2355015, 2358381] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE Feature: gene Location: 223219-223539 bp Ori: APS46354.1 Feature: domain Description: HATPase_c_2 Location: 223243-223522 bp Feature: domain Description: HATPase_c_2 Location: 2 2 32 43-2 2 352 2 bp Feature: gene Location: 223636-224136 bp Ori: APS46355.1 Feature: domain Description: Zn_Tnp_IS91 Location: 223708-223981 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 2 3708-2 2 3981 bp Feature: gene Location: 224192-224962 bp Ori: APS46356.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224198-224555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 4198-2 2 4555 bp Feature: gene Location: 225258-225452 bp Feature: gene Location: 225631-226593 bp Ori: APS46358.1 Feature: domain Description: MDR_like_2 Location: 225634-226573 bp Feature: domain Description: MDR_like_2 Location: 2 2 5634-2 2 6573 bp Feature: gene Location: 2136063-2136527 bp Ori: APS48094.1 Feature: domain Description: DDE_3 Location: 2136066-2136450 bp Feature: domain Description: DDE_3 Location: 2 136066-2 136450 bp Feature: gene Location: 2136584-2136949 bp Ori: APS48095.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2136599-2136938 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 136599-2 136938 bp Feature: gene Location: 2137037-2137669 bp Ori: APS48096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2137058-2137265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 137058-2 1372 65 bp Feature: gene Location: 2137725-2138123 bp Ori: APS48097.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2137737-2137968 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 137737-2 137968 bp Feature: gene Location: 2138209-2138736 bp Feature: gene Location: 2355015-2355380 bp Ori: APS48283.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2355030-2355369 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 355030-2 355369 bp Feature: gene Location: 2355402-2355731 bp Ori: APS48284.1 Feature: domain Description: Y2_Tnp Location: 2355489-2355636 bp Feature: domain Description: Y2 _Tnp Location: 2 355489-2 355636 bp Feature: gene Location: 2356140-2356829 bp Ori: APS48285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2356422-2356815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 35642 2 -2 356815 bp Feature: gene Location: 2357697-2357990 bp Ori: APS48286.1 Feature: domain Description: InsE Location: 2357703-2357982 bp Feature: domain Description: InsE Location: 2 357703-2 357982 bp Feature: gene Location: 2358124-2358381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_2 (pfam13581), Zn_Tnp_IS91 (pfam14319), RVT-GII, MDR_like_2 (cd05289), DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), InsE (COG2963)