myRT

myRT report for GCA_001932755.1_ASM193275v1

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Seq: CP013768.1 Piscirickettsia salmonis strain PM23019A, complete genome (3054745 bp)
Overview 1 RT 1: 152610-155578 bp 2 RT 2: 931348-935590 bp 3 RT 3: 1066086-1069727 bp 4 RT 4: 2988127-2990800 bp Neighborhood of RT #1 [152610, 155586] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 InsE Neighborhood of RT #2 [931348, 935592] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #3 [1066086, 1069747] HATPase_c_2 Zn_Tnp_IS91 RVT-GII MDR_like_2 Neighborhood of RT #4 [2988127, 2990800] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Feature: gene Location: 152610-152975 bp Ori: APS49544.1 Feature: domain Description: HTH_Tnp_IS630 Location: 152625-152964 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 52625-1 52964 bp Feature: gene Location: 152997-153326 bp Ori: APS49545.1 Feature: domain Description: Y2_Tnp Location: 153084-153231 bp Feature: domain Description: Y2_Tnp Location: 1 53084-1 53231 bp Feature: gene Location: 153735-154424 bp Ori: APS49546.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154017-154410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5401 7-1 5441 0 bp Feature: gene Location: 154433-155245 bp Ori: APS49547.1 Feature: domain Description: PHA02517 Location: 154448-155231 bp Feature: domain Description: PHA0251 7 Location: 1 54448-1 55231 bp Feature: gene Location: 155293-155586 bp Ori: APS49548.1 Feature: domain Description: InsE Location: 155299-155578 bp Feature: domain Description: InsE Location: 1 55299-1 55578 bp Feature: gene Location: 931348-932010 bp Ori: APS50188.1 Feature: domain Description: beta_CA_cladeB Location: 931396-931972 bp Feature: domain Description: beta_CA_cladeB Location: 931 396-931 972 bp Feature: gene Location: 932532-933032 bp Ori: APS50189.1 Feature: domain Description: Zn_Tnp_IS91 Location: 932604-932877 bp Feature: domain Description: Zn_Tnp_IS91 Location: 932604-932877 bp Feature: gene Location: 933088-934335 bp Ori: APS50190.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933247-933928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933247-933928 bp Feature: gene Location: 934444-934746 bp Feature: gene Location: 935242-935592 bp Feature: domain Description: Y2_Tnp Location: 935245-935590 bp Feature: domain Description: Y2_Tnp Location: 935245-935590 bp Feature: gene Location: 1066086-1066406 bp Ori: APS50305.1 Feature: domain Description: HATPase_c_2 Location: 1066110-1066389 bp Feature: domain Description: HATPase_c_2 Location: 1 0661 1 0-1 066389 bp Feature: gene Location: 1066899-1067288 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1066905-1067136 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 066905-1 0671 36 bp Feature: gene Location: 1067376-1068116 bp Ori: APS50306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067382-1067739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 067382-1 067739 bp Feature: gene Location: 1068412-1068606 bp Feature: gene Location: 1068785-1069747 bp Ori: APS50308.1 Feature: domain Description: MDR_like_2 Location: 1068788-1069727 bp Feature: domain Description: MDR_like_2 Location: 1 068788-1 069727 bp Feature: gene Location: 2988127-2988591 bp Ori: APS52050.1 Feature: domain Description: DDE_3 Location: 2988130-2988514 bp Feature: domain Description: DDE_3 Location: 29881 30-298851 4 bp Feature: gene Location: 2988648-2989013 bp Ori: APS52051.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2988663-2989002 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2988663-2989002 bp Feature: gene Location: 2989101-2989733 bp Ori: APS52052.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2989122-2989329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29891 22-2989329 bp Feature: gene Location: 2989789-2990187 bp Ori: APS52053.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2989801-2990032 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2989801 -2990032 bp Feature: gene Location: 2990273-2990800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), beta_CA_cladeB (cd00884), Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), DDE_3 (pfam13358)

Seq: CP013769.1 Piscirickettsia salmonis strain PM23019A plasmid p1PS3, complete sequence (153216 bp)
Overview 1 RT 1: 39724-43078 bp 2 RT 2: 82651-86392 bp 3 RT 3: 100835-104711 bp Neighborhood of RT #1 [39724, 43092] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [82651, 86406] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [100835, 104752] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 39724-40536 bp Ori: APS52333.1 Feature: domain Description: PHA02517 Location: 39739-40522 bp Feature: domain Description: PHA02 517 Location: 39739-4052 2 bp Feature: gene Location: 40584-40877 bp Ori: APS52334.1 Feature: domain Description: InsE Location: 40590-40869 bp Feature: domain Description: InsE Location: 40590-40869 bp Feature: gene Location: 40943-42214 bp Ori: APS52335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41129-41810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4112 9-41810 bp Feature: gene Location: 42270-42668 bp Ori: APS52336.1 Feature: domain Description: Zn_Tnp_IS91 Location: 42282-42513 bp Feature: domain Description: Zn_Tnp_IS91 Location: 42 2 82 -42 513 bp Feature: gene Location: 42724-43092 bp Ori: APS52337.1 Feature: domain Description: major_cap_HK97 Location: 42817-43078 bp Feature: domain Description: major_cap_HK97 Location: 42 817-43078 bp Feature: gene Location: 82651-83115 bp Ori: APS52390.1 Feature: domain Description: HTH_3 Location: 82660-82801 bp Feature: domain Description: HTH_3 Location: 82 660-82 801 bp Feature: gene Location: 83847-84200 bp Feature: domain Description: Y2_Tnp Location: 83853-84198 bp Feature: domain Description: Y2 _Tnp Location: 83853-84198 bp Feature: gene Location: 84526-85233 bp Ori: APS52391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84808-85198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84808-85198 bp Feature: gene Location: 85220-85546 bp Ori: APS52464.1 Feature: domain Description: InsE Location: 85265-85538 bp Feature: domain Description: InsE Location: 852 65-85538 bp Feature: gene Location: 85594-86406 bp Ori: APS52392.1 Feature: domain Description: PHA02517 Location: 85609-86392 bp Feature: domain Description: PHA02 517 Location: 85609-86392 bp Feature: gene Location: 100835-101059 bp Ori: APS52468.1 Feature: domain Description: DDE_3 Location: 100838-100982 bp Feature: domain Description: DDE_3 Location: 100838-100982 bp Feature: gene Location: 101063-101317 bp Ori: APS52406.1 Feature: domain Description: InsE Location: 101069-101315 bp Feature: domain Description: InsE Location: 101069-101315 bp Feature: gene Location: 101277-102404 bp Ori: APS52407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101559-102237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101559-102 2 37 bp Feature: gene Location: 103188-103538 bp Feature: domain Description: Y2_Tnp Location: 103191-103536 bp Feature: domain Description: Y2 _Tnp Location: 103191-103536 bp Feature: gene Location: 104162-104752 bp Ori: APS52408.1 Feature: domain Description: Phage_integrase Location: 104189-104711 bp Feature: domain Description: Phage_integrase Location: 104189-104711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), DDE_3 (pfam13358), Phage_integrase (pfam00589)