myRT

myRT report for GCA_001932775.1_ASM193277v1

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Seq: CP013773.1 Piscirickettsia salmonis strain PM37984A, complete genome (3046533 bp)
Overview 1 RT 1: 149607-152575 bp 2 RT 2: 928398-932640 bp 3 RT 3: 1063148-1066789 bp 4 RT 4: 2985348-2988021 bp Neighborhood of RT #1 [149607, 152583] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 InsE Neighborhood of RT #2 [928398, 932642] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #3 [1063148, 1066809] HATPase_c_2 Zn_Tnp_IS91 RVT-GII MDR_like_2 Neighborhood of RT #4 [2985348, 2988021] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Feature: gene Location: 149607-149972 bp Ori: APS52725.1 Feature: domain Description: HTH_Tnp_IS630 Location: 149622-149961 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 49622-1 49961 bp Feature: gene Location: 149994-150323 bp Ori: APS52726.1 Feature: domain Description: Y2_Tnp Location: 150081-150228 bp Feature: domain Description: Y2_Tnp Location: 1 50081 -1 50228 bp Feature: gene Location: 150732-151421 bp Ori: APS52727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151014-151407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 01 4-1 51 407 bp Feature: gene Location: 151430-152242 bp Ori: APS52728.1 Feature: domain Description: PHA02517 Location: 151445-152228 bp Feature: domain Description: PHA0251 7 Location: 1 51 445-1 52228 bp Feature: gene Location: 152290-152583 bp Ori: APS52729.1 Feature: domain Description: InsE Location: 152296-152575 bp Feature: domain Description: InsE Location: 1 52296-1 52575 bp Feature: gene Location: 928398-929060 bp Ori: APS53387.1 Feature: domain Description: beta_CA_cladeB Location: 928446-929022 bp Feature: domain Description: beta_CA_cladeB Location: 928446-929022 bp Feature: gene Location: 929582-930082 bp Ori: APS53388.1 Feature: domain Description: Zn_Tnp_IS91 Location: 929654-929927 bp Feature: domain Description: Zn_Tnp_IS91 Location: 929654-929927 bp Feature: gene Location: 930138-931385 bp Ori: APS53389.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930297-930978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930297-930978 bp Feature: gene Location: 931494-931796 bp Feature: gene Location: 932292-932642 bp Feature: domain Description: Y2_Tnp Location: 932295-932640 bp Feature: domain Description: Y2_Tnp Location: 932295-932640 bp Feature: gene Location: 1063148-1063468 bp Ori: APS53505.1 Feature: domain Description: HATPase_c_2 Location: 1063172-1063451 bp Feature: domain Description: HATPase_c_2 Location: 1 0631 72-1 063451 bp Feature: gene Location: 1063961-1064350 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1063967-1064198 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 063967-1 0641 98 bp Feature: gene Location: 1064438-1065178 bp Ori: APS53506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064444-1064801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 064444-1 064801 bp Feature: gene Location: 1065474-1065668 bp Feature: gene Location: 1065847-1066809 bp Ori: APS53508.1 Feature: domain Description: MDR_like_2 Location: 1065850-1066789 bp Feature: domain Description: MDR_like_2 Location: 1 065850-1 066789 bp Feature: gene Location: 2985348-2985812 bp Ori: APS55268.1 Feature: domain Description: DDE_3 Location: 2985351-2985735 bp Feature: domain Description: DDE_3 Location: 2985351 -2985735 bp Feature: gene Location: 2985869-2986234 bp Ori: APS55269.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2985884-2986223 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2985884-2986223 bp Feature: gene Location: 2986352-2986954 bp Ori: APS55270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2986358-2986550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2986358-2986550 bp Feature: gene Location: 2987010-2987408 bp Ori: APS55271.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2987022-2987253 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2987022-2987253 bp Feature: gene Location: 2987494-2988021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), beta_CA_cladeB (cd00884), Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), DDE_3 (pfam13358)

Seq: CP013774.1 Piscirickettsia salmonis strain PM37984A plasmid p1PS4, complete sequence (138636 bp)
Overview 1 RT 1: 20981-24722 bp 2 RT 2: 39166-43042 bp 3 RT 3: 98369-101392 bp 4 RT 4: 116709-120063 bp Neighborhood of RT #1 [20981, 24736] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #2 [39166, 43083] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Neighborhood of RT #3 [98369, 101397] PHA02517 InsE RVT-GII InsE PHA02517 Neighborhood of RT #4 [116709, 120077] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Feature: gene Location: 20981-21445 bp Ori: APS55542.1 Feature: domain Description: HTH_3 Location: 20990-21131 bp Feature: domain Description: HTH_3 Location: 2 0990-2 1131 bp Feature: gene Location: 22177-22530 bp Feature: domain Description: Y2_Tnp Location: 22183-22528 bp Feature: domain Description: Y2 _Tnp Location: 2 2 183-2 2 52 8 bp Feature: gene Location: 22856-23563 bp Ori: APS55543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23138-23528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3138-2 352 8 bp Feature: gene Location: 23550-23876 bp Ori: APS55663.1 Feature: domain Description: InsE Location: 23595-23868 bp Feature: domain Description: InsE Location: 2 3595-2 3868 bp Feature: gene Location: 23924-24736 bp Ori: APS55544.1 Feature: domain Description: PHA02517 Location: 23939-24722 bp Feature: domain Description: PHA02 517 Location: 2 3939-2 472 2 bp Feature: gene Location: 39166-39390 bp Ori: APS55667.1 Feature: domain Description: DDE_3 Location: 39169-39313 bp Feature: domain Description: DDE_3 Location: 39169-39313 bp Feature: gene Location: 39394-39648 bp Ori: APS55557.1 Feature: domain Description: InsE Location: 39400-39646 bp Feature: domain Description: InsE Location: 39400-39646 bp Feature: gene Location: 39608-40735 bp Ori: APS55558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39890-40568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39890-40568 bp Feature: gene Location: 41519-41869 bp Feature: domain Description: Y2_Tnp Location: 41522-41867 bp Feature: domain Description: Y2 _Tnp Location: 4152 2 -41867 bp Feature: gene Location: 42493-43083 bp Ori: APS55559.1 Feature: domain Description: Phage_integrase Location: 42520-43042 bp Feature: domain Description: Phage_integrase Location: 42 52 0-43042 bp Feature: gene Location: 98369-99181 bp Ori: APS55619.1 Feature: domain Description: PHA02517 Location: 98384-99167 bp Feature: domain Description: PHA02 517 Location: 98384-99167 bp Feature: gene Location: 99199-99321 bp Feature: domain Description: InsE Location: 99205-99310 bp Feature: domain Description: InsE Location: 992 05-99310 bp Feature: gene Location: 99384-99974 bp Ori: APS55620.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99387-99795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99387-99795 bp Feature: gene Location: 100589-100882 bp Ori: APS55621.1 Feature: domain Description: InsE Location: 100595-100874 bp Feature: domain Description: InsE Location: 100595-100874 bp Feature: gene Location: 100999-101397 bp Feature: domain Description: PHA02517 Location: 101011-101392 bp Feature: domain Description: PHA02 517 Location: 101011-101392 bp Feature: gene Location: 116709-117521 bp Ori: APS55634.1 Feature: domain Description: PHA02517 Location: 116724-117507 bp Feature: domain Description: PHA02 517 Location: 11672 4-117507 bp Feature: gene Location: 117569-117862 bp Ori: APS55635.1 Feature: domain Description: InsE Location: 117575-117854 bp Feature: domain Description: InsE Location: 117575-117854 bp Feature: gene Location: 117928-119199 bp Ori: APS55636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118114-118795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118114-118795 bp Feature: gene Location: 119255-119653 bp Ori: APS55637.1 Feature: domain Description: Zn_Tnp_IS91 Location: 119267-119498 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1192 67-119498 bp Feature: gene Location: 119709-120077 bp Ori: APS55638.1 Feature: domain Description: major_cap_HK97 Location: 119802-120063 bp Feature: domain Description: major_cap_HK97 Location: 119802 -12 0063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_3 (pfam13358), Phage_integrase (pfam00589), Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554)