myRT

myRT report for GCA_001932795.1_ASM193279v1

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Seq: CP013779.1 Piscirickettsia salmonis strain PM51819A plasmid p1PS5, complete sequence (165427 bp)
Overview 1 RT 1: 20469-23317 bp 2 RT 2: 122407-127320 bp 3 RT 3: 138688-142585 bp Neighborhood of RT #1 [20469, 23394] major_cap_HK97 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #2 [122407, 127320] Phage_integrase Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [138688, 142899] PHA02517 InsE RVT-GII Y2_Tnp HTH_3 Feature: gene Location: 20469-20837 bp Ori: APS58815.1 Feature: domain Description: major_cap_HK97 Location: 20562-20823 bp Feature: domain Description: major_cap_HK97 Location: 20562-20823 bp Feature: gene Location: 20893-21291 bp Ori: APS58816.1 Feature: domain Description: Zn_Tnp_IS91 Location: 20905-21136 bp Feature: domain Description: Zn_Tnp_IS91 Location: 20905-21 1 36 bp Feature: gene Location: 21347-22408 bp Ori: APS58817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21350-22004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 350-22004 bp Feature: gene Location: 22508-22873 bp Ori: APS58818.1 Feature: domain Description: HTH_Tnp_IS630 Location: 22523-22862 bp Feature: domain Description: HTH_Tnp_IS630 Location: 22523-22862 bp Feature: gene Location: 23170-23394 bp Ori: APS58973.1 Feature: domain Description: DDE_3 Location: 23173-23317 bp Feature: domain Description: DDE_3 Location: 231 73-2331 7 bp Feature: gene Location: 122407-122997 bp Ori: APS58922.1 Feature: domain Description: Phage_integrase Location: 122434-122956 bp Feature: domain Description: Phage_integrase Location: 1 22434-1 22956 bp Feature: gene Location: 123621-123971 bp Feature: domain Description: Y2_Tnp Location: 123624-123969 bp Feature: domain Description: Y2_Tnp Location: 1 23624-1 23969 bp Feature: gene Location: 124755-126134 bp Ori: APS58923.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125037-125715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25037-1 2571 5 bp Feature: domain Description: InsE Location: 125853-126126 bp Feature: domain Description: InsE Location: 1 25853-1 261 26 bp Feature: gene Location: 126182-126994 bp Ori: APS58924.1 Feature: domain Description: PHA02517 Location: 126197-126980 bp Feature: domain Description: PHA0251 7 Location: 1 261 97-1 26980 bp Feature: gene Location: 127063-127320 bp Feature: gene Location: 138688-139500 bp Ori: APS58937.1 Feature: domain Description: PHA02517 Location: 138703-139486 bp Feature: domain Description: PHA0251 7 Location: 1 38703-1 39486 bp Feature: gene Location: 139548-139841 bp Ori: APS58938.1 Feature: domain Description: InsE Location: 139554-139833 bp Feature: domain Description: InsE Location: 1 39554-1 39833 bp Feature: gene Location: 139862-140569 bp Ori: APS58939.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140144-140534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 401 44-1 40534 bp Feature: gene Location: 141065-141415 bp Feature: domain Description: Y2_Tnp Location: 141068-141413 bp Feature: domain Description: Y2_Tnp Location: 1 41 068-1 41 41 3 bp Feature: gene Location: 142435-142899 bp Ori: APS58940.1 Feature: domain Description: HTH_3 Location: 142444-142585 bp Feature: domain Description: HTH_3 Location: 1 42444-1 42585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT major_cap_HK97 (TIGR01554), Zn_Tnp_IS91 (pfam14319), RVT-GII, HTH_Tnp_IS630 (pfam01710), DDE_3 (pfam13358), Phage_integrase (pfam00589), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_3 (pfam01381)

Seq: CP013778.1 Piscirickettsia salmonis strain PM51819A, complete genome (3141542 bp)
Overview 1 RT 1: 611991-616550 bp 2 RT 2: 770844-774130 bp 3 RT 3: 1945376-1948313 bp 4 RT 4: 2890396-2893070 bp 5 RT 5: 2982836-2986480 bp 6 RT 6: 3123202-3127412 bp Neighborhood of RT #1 [611991, 616564] DDE_3 HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #2 [770844, 774141] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #3 [1945376, 1948313] RVT-GII Neighborhood of RT #4 [2890396, 2893070] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [2982836, 2986497] MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #6 [3123202, 3127450] HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Feature: gene Location: 611991-612215 bp Ori: APS58664.1 Feature: domain Description: DDE_3 Location: 611994-612138 bp Feature: domain Description: DDE_3 Location: 611994-612 138 bp Feature: gene Location: 612405-612830 bp Ori: APS56304.1 Feature: domain Description: HTH_Tnp_1 Location: 612510-612741 bp Feature: domain Description: HTH_Tnp_1 Location: 612 510-612 741 bp Feature: gene Location: 612867-613484 bp Ori: APS56305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612870-613281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612 870-6132 81 bp Feature: gene Location: 613562-614374 bp Ori: APS56306.1 Feature: domain Description: PHA02517 Location: 613577-614360 bp Feature: domain Description: PHA02 517 Location: 613577-614360 bp Feature: gene Location: 614422-614715 bp Ori: APS56307.1 Feature: domain Description: InsE Location: 614428-614707 bp Feature: domain Description: InsE Location: 61442 8-614707 bp Feature: gene Location: 614675-615214 bp Ori: APS56308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614891-615119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614891-615119 bp Feature: gene Location: 615689-616186 bp Ori: APS56309.1 Feature: domain Description: Y2_Tnp Location: 615776-616148 bp Feature: domain Description: Y2 _Tnp Location: 615776-616148 bp Feature: gene Location: 616208-616564 bp Ori: APS56310.1 Feature: domain Description: HTH_Tnp_IS630 Location: 616223-616550 bp Feature: domain Description: HTH_Tnp_IS630 Location: 6162 2 3-616550 bp Feature: gene Location: 770844-771170 bp Ori: APS56449.1 Feature: domain Description: InsE Location: 770889-771162 bp Feature: domain Description: InsE Location: 770889-771162 bp Feature: gene Location: 771218-772030 bp Ori: APS56450.1 Feature: domain Description: PHA02517 Location: 771233-772016 bp Feature: domain Description: PHA02 517 Location: 7712 33-772 016 bp Feature: gene Location: 772456-773016 bp Ori: APS56451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772738-772987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772 738-772 987 bp Feature: gene Location: 773425-773754 bp Ori: APS56452.1 Feature: domain Description: Y2_Tnp Location: 773512-773659 bp Feature: domain Description: Y2 _Tnp Location: 773512 -773659 bp Feature: gene Location: 773776-774141 bp Ori: APS56453.1 Feature: domain Description: HTH_Tnp_IS630 Location: 773791-774130 bp Feature: domain Description: HTH_Tnp_IS630 Location: 773791-774130 bp Feature: gene Location: 1945376-1945627 bp Feature: gene Location: 1945702-1945944 bp Feature: gene Location: 1946046-1947362 bp Ori: APS57545.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1946325-1947003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194632 5-1947003 bp Feature: gene Location: 1947471-1947653 bp Feature: gene Location: 1948062-1948313 bp Feature: gene Location: 2890396-2890860 bp Ori: APS58397.1 Feature: domain Description: DDE_3 Location: 2890399-2890783 bp Feature: domain Description: DDE_3 Location: 2 890399-2 890783 bp Feature: gene Location: 2890917-2891282 bp Ori: APS58398.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2890932-2891271 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 890932 -2 8912 71 bp Feature: gene Location: 2891400-2891957 bp Ori: APS58399.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891406-2891598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 891406-2 891598 bp Feature: gene Location: 2892059-2892457 bp Ori: APS58400.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2892071-2892302 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 892 071-2 892 302 bp Feature: gene Location: 2892543-2893070 bp Feature: gene Location: 2982836-2983798 bp Ori: APS58480.1 Feature: domain Description: MDR_like_2 Location: 2982839-2983778 bp Feature: domain Description: MDR_like_2 Location: 2 982 839-2 983778 bp Feature: gene Location: 2983977-2984171 bp Feature: gene Location: 2984467-2985207 bp Ori: APS58482.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2984473-2984830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 984473-2 984830 bp Feature: gene Location: 2985295-2985684 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2985301-2985532 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 985301-2 985532 bp Feature: gene Location: 2986177-2986497 bp Ori: APS58483.1 Feature: domain Description: HATPase_c_2 Location: 2986201-2986480 bp Feature: domain Description: HATPase_c_2 Location: 2 9862 01-2 986480 bp Feature: gene Location: 3123202-3124038 bp Ori: APS58604.1 Feature: domain Description: HTH_21 Location: 3123325-3123478 bp Feature: domain Description: HTH_2 1 Location: 312 332 5-312 3478 bp Feature: domain Description: Tra5 Location: 3123526-3124006 bp Feature: domain Description: Tra5 Location: 312 352 6-312 4006 bp Feature: gene Location: 3124121-3124357 bp Feature: gene Location: 3124466-3125710 bp Ori: APS58606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3124625-3125306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 462 5-312 5306 bp Feature: gene Location: 3125766-3126266 bp Ori: APS58607.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3125838-3126111 bp Feature: domain Description: Zn_Tnp_IS91 Location: 312 5838-312 6111 bp Feature: gene Location: 3126788-3127450 bp Ori: APS58608.1 Feature: domain Description: beta_CA_cladeB Location: 3126836-3127412 bp Feature: domain Description: beta_CA_cladeB Location: 312 6836-312 7412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_1 (pfam01527), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Y2_Tnp (pfam04986), HTH_Tnp_IS630 (pfam01710), Zn_Tnp_IS91 (pfam14319), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884)