myRT

myRT report for GCA_001941865.1_ASM194186v1

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Seq: CP016162.1 Pseudomonas alcaliphila JAB1 chromosome, complete genome (5340293 bp)
Overview 1 RT 1: 1541548-1546608 bp 2 RT 2: 2706995-2713743 bp 3 RT 3: 4010025-4014710 bp 4 RT 4: 5097172-5104256 bp Neighborhood of RT #1 [1541548, 1546610] InsE RVT_N RVT-GII GIIM DDE_Tnp_1 Toluene_X Neighborhood of RT #2 [2706995, 2713748] cztR_silR_copR cztS_silS_copS RVT_N RVT-GII GIIM HNHc PHA02517 InsE Neighborhood of RT #3 [4010025, 4014718] SnoaL_2 GlxA RVT-GII GIIM GlnQ Neighborhood of RT #4 [5097172, 5104261] PBP2_DppA_like PRK00024 RVT_N RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 1541548-1541856 bp Ori: APU29491.1 Feature: domain Description: InsE Location: 1541563-1541848 bp Feature: domain Description: InsE Location: 1 541 563-1 541 848 bp Feature: gene Location: 1542175-1542294 bp Feature: gene Location: 1542887-1544392 bp Ori: APU29493.1 Feature: domain Description: RVT_N Location: 1542968-1543193 bp Feature: domain Description: RVT_N Location: 1 542968-1 5431 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1543244-1543886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 543244-1 543886 bp Feature: domain Description: GIIM Note: maturase Location: 1543937-1544171 bp Feature: domain Description: GIIM Note: maturase Location: 1 543937-1 5441 71 bp Feature: gene Location: 1544465-1544923 bp Feature: domain Description: DDE_Tnp_1 Location: 1544468-1544873 bp Feature: domain Description: DDE_Tnp_1 Location: 1 544468-1 544873 bp Feature: gene Location: 1545237-1546610 bp Ori: APU29494.1 Feature: domain Description: Toluene_X Location: 1545288-1546608 bp Feature: domain Description: Toluene_X Location: 1 545288-1 546608 bp Feature: gene Location: 2706995-2707672 bp Ori: APU30496.1 Feature: domain Description: cztR_silR_copR Location: 2707004-2707658 bp Feature: domain Description: cztR_silR_copR Location: 2707004-2707658 bp Feature: gene Location: 2707669-2709051 bp Ori: APU30497.1 Feature: domain Description: cztS_silS_copS Location: 2707687-2709040 bp Feature: domain Description: cztS_silS_copS Location: 2707687-2709040 bp Feature: gene Location: 2710885-2712618 bp Ori: APU30498.1 Feature: domain Description: RVT_N Location: 2710945-2711188 bp Feature: domain Description: RVT_N Location: 271 0945-271 1 1 88 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711236-2711887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 1 236-271 1 887 bp Feature: domain Description: GIIM Note: maturase Location: 2711965-2712193 bp Feature: domain Description: GIIM Note: maturase Location: 271 1 965-271 21 93 bp Feature: domain Description: HNHc Note: nucleases Location: 2712421-2712577 bp Feature: domain Description: HNHc Note: nucleases Location: 271 2421 -271 2577 bp Feature: gene Location: 2712754-2713368 bp Feature: domain Description: PHA02517 Location: 2712760-2713369 bp Feature: domain Description: PHA0251 7 Location: 271 2760-271 3369 bp Feature: gene Location: 2713425-2713748 bp Ori: APU30499.1 Feature: domain Description: InsE Location: 2713434-2713743 bp Feature: domain Description: InsE Location: 271 3434-271 3743 bp Feature: gene Location: 4010025-4010495 bp Ori: APU31590.1 Feature: domain Description: SnoaL_2 Location: 4010052-4010355 bp Feature: domain Description: SnoaL_2 Location: 401 0052-401 0355 bp Feature: gene Location: 4010658-4011599 bp Ori: APU31591.1 Feature: domain Description: GlxA Location: 4010664-4011591 bp Feature: domain Description: GlxA Location: 401 0664-401 1 591 bp Feature: gene Location: 4012156-4013523 bp Ori: APU31592.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4012486-4013104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 2486-401 31 04 bp Feature: domain Description: GIIM Note: maturase Location: 4013161-4013371 bp Feature: domain Description: GIIM Note: maturase Location: 401 31 61 -401 3371 bp Feature: gene Location: 4013617-4013907 bp Feature: gene Location: 4013957-4014718 bp Ori: APU31594.1 Gene: glnQ Feature: domain Description: GlnQ Location: 4013996-4014710 bp Feature: domain Description: GlnQ Location: 401 3996-401 471 0 bp Feature: gene Location: 5097172-5098749 bp Ori: APU32536.1 Feature: domain Description: PBP2_DppA_like Location: 5097229-5098696 bp Feature: domain Description: PBP2_DppA_like Location: 5097229-5098696 bp Feature: gene Location: 5098855-5099529 bp Ori: APU32537.1 Feature: domain Description: PRK00024 Location: 5098858-5099527 bp Feature: domain Description: PRK00024 Location: 5098858-5099527 bp Feature: gene Location: 5100654-5102387 bp Ori: APU32538.1 Feature: domain Description: RVT_N Location: 5100714-5100957 bp Feature: domain Description: RVT_N Location: 51 0071 4-51 00957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5101005-5101656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 01 005-51 01 656 bp Feature: domain Description: GIIM Note: maturase Location: 5101734-5101962 bp Feature: domain Description: GIIM Note: maturase Location: 51 01 734-51 01 962 bp Feature: domain Description: HNHc Note: nucleases Location: 5102190-5102346 bp Feature: domain Description: HNHc Note: nucleases Location: 51 021 90-51 02346 bp Feature: gene Location: 5102595-5103803 bp Ori: APU32539.1 Feature: domain Description: PRK05579 Location: 5102601-5103795 bp Feature: domain Description: PRK05579 Location: 51 02601 -51 03795 bp Feature: gene Location: 5103806-5104261 bp Ori: APU32540.1 Feature: domain Description: dut Location: 5103812-5104256 bp Feature: domain Description: dut Location: 51 0381 2-51 04256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), Toluene_X (pfam03349), cztR_silR_copR (TIGR01387), cztS_silS_copS (TIGR01386), HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed)
SnoaL_2 (pfam12680), GlxA (COG4977), GlnQ (COG1126), PBP2_DppA_like (cd08493), PRK00024 (DNA repair protein RadC), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)