myRT

myRT report for GCA_001952875.1_ASM195287v1

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Seq: CP015382.1 Klebsiella pneumoniae strain CN1, complete genome (5237856 bp)
Overview 1 RT 1: 672891-680418 bp 2 RT 2: 1804334-1810804 bp 3 RT 3: 3093867-3099230 bp Neighborhood of RT #1 [672891, 680418] PHA00080 Phage_GPA RVT-GII DinI RVT-Retrons Neighborhood of RT #2 [1804334, 1810818] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3093867, 3099286] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Feature: gene Location: 672891-673112 bp Ori: APV18101.1 Feature: domain Description: PHA00080 Location: 672897-673098 bp Feature: domain Description: PHA00080 Location: 672897-673098 bp Feature: gene Location: 673114-675330 bp Ori: APV18102.1 Feature: domain Description: Phage_GPA Location: 673531-674473 bp Feature: domain Description: Phage_GPA Location: 673531 -674473 bp Feature: gene Location: 675796-677280 bp Ori: APV18103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676198-676888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6761 98-676888 bp Feature: gene Location: 677358-677798 bp Ori: APV18104.1 Feature: domain Description: DinI Location: 677613-677796 bp Feature: domain Description: DinI Location: 67761 3-677796 bp Feature: gene Location: 678417-678617 bp Feature: gene Location: 678705-679655 bp Ori: APV18106.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 678885-679428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 678885-679428 bp Feature: gene Location: 679794-680225 bp Feature: gene Location: 680224-680418 bp Feature: gene Location: 1804334-1805758 bp Ori: APV19126.1 Gene: sbcB Feature: domain Description: SbcB Location: 1804340-1805756 bp Feature: domain Description: SbcB Location: 1 804340-1 805756 bp Feature: gene Location: 1805939-1807102 bp Ori: APV22342.1 Feature: domain Description: dacD Location: 1805942-1807097 bp Feature: domain Description: dacD Location: 1 805942-1 807097 bp Feature: gene Location: 1807622-1809106 bp Ori: APV19127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808024-1808714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 808024-1 80871 4 bp Feature: gene Location: 1809188-1809661 bp Ori: APV19128.1 Feature: domain Description: PRK10016 Location: 1809191-1809650 bp Feature: domain Description: PRK1 001 6 Location: 1 8091 91 -1 809650 bp Feature: gene Location: 1809760-1810818 bp Ori: APV19129.1 Feature: domain Description: YccC Location: 1809766-1810804 bp Feature: domain Description: YccC Location: 1 809766-1 81 0804 bp Feature: gene Location: 3093867-3095132 bp Ori: APV20367.1 Feature: domain Description: umuC Location: 3093870-3095130 bp Feature: domain Description: umuC Location: 3093870-30951 30 bp Feature: gene Location: 3095135-3095554 bp Ori: APV20368.1 Feature: domain Description: PRK10276 Location: 3095138-3095549 bp Feature: domain Description: PRK1 0276 Location: 30951 38-3095549 bp Feature: gene Location: 3095633-3097117 bp Ori: APV20369.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096035-3096725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096035-3096725 bp Feature: gene Location: 3097734-3097976 bp Ori: APV20370.1 Feature: domain Description: DinI Location: 3097785-3097965 bp Feature: domain Description: DinI Location: 3097785-3097965 bp Feature: gene Location: 3098147-3099286 bp Ori: APV20371.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3098330-3099230 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3098330-3099230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00080 (DksA-like zinc finger domain containing protein), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), RVT-Retrons, SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), GT9_LPS_heptosyltransferase (cd03789)

Seq: CP015383.1 Klebsiella pneumoniae strain CN1 plasmid pCN1_1, complete sequence (182846 bp)
Overview 1 RT 1: 110343-115360 bp Neighborhood of RT #1 [110343, 115362] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 110343-111615 bp Feature: domain Description: umuC Location: 110346-111342 bp Feature: domain Description: umuC Location: 110346-111342 bp Feature: gene Location: 111615-112040 bp Ori: APV22585.1 Feature: domain Description: PRK10276 Location: 111618-112026 bp Feature: domain Description: PRK102 76 Location: 111618-112 02 6 bp Feature: gene Location: 112445-113953 bp Ori: APV22586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112847-113561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 847-113561 bp Feature: gene Location: 114187-114417 bp Feature: gene Location: 114937-115362 bp Ori: APV22587.1 Feature: domain Description: Antirestrict Location: 115072-115360 bp Feature: domain Description: Antirestrict Location: 115072 -115360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)