myRT

myRT report for GCA_001953235.1_ASM195323v1

Download annotations/find similar RTs

Seq: CP018828.1 Enterococcus faecium strain ISMMS_VRE_12 chromosome, complete genome (2807999 bp)
Overview 1 RT 1: 255585-272478 bp 2 RT 2: 416745-423576 bp 3 RT 3: 2636358-2655585 bp 4 RT 4: 2713355-2717956 bp Neighborhood of RT #1 [255585, 272478] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [416745, 423584] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2636358, 2655585] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2713355, 2717964] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 HTH_XRE Feature: gene Location: 255585-256712 bp Feature: domain Description: FtsK Location: 256194-256707 bp Feature: domain Description: FtsK Location: 2561 94-256707 bp Feature: gene Location: 257096-257326 bp Feature: gene Location: 257445-259304 bp Ori: APV53210.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257754-258495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257754-258495 bp Feature: domain Description: HNHc Note: nucleases Location: 259050-259188 bp Feature: domain Description: HNHc Note: nucleases Location: 259050-2591 88 bp Feature: gene Location: 259425-259682 bp Feature: gene Location: 259685-259838 bp Feature: gene Location: 259861-261066 bp Ori: APV53211.1 Feature: domain Description: HTH_XRE Location: 259906-260050 bp Feature: domain Description: HTH_XRE Location: 259906-260050 bp Feature: domain Description: Rol_Rep_N Location: 260077-260344 bp Feature: domain Description: Rol_Rep_N Location: 260077-260344 bp Feature: domain Description: Rep_trans Location: 260368-260977 bp Feature: domain Description: Rep_trans Location: 260368-260977 bp Feature: gene Location: 261850-263760 bp Ori: APV53212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262183-262921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621 83-262921 bp Feature: domain Description: HNHc Note: nucleases Location: 263476-263641 bp Feature: domain Description: HNHc Note: nucleases Location: 263476-263641 bp Feature: gene Location: 263921-264088 bp Feature: gene Location: 264205-264702 bp Ori: APV53214.1 Feature: domain Description: ArdA Location: 264223-264688 bp Feature: domain Description: ArdA Location: 264223-264688 bp Feature: gene Location: 264789-265181 bp Ori: APV53215.1 Feature: domain Description: TcpE Location: 264807-265107 bp Feature: domain Description: TcpE Location: 264807-2651 07 bp Feature: gene Location: 265165-266718 bp Ori: APV53216.1 Feature: domain Description: AAA_10 Location: 266497-266683 bp Feature: domain Description: AAA_1 0 Location: 266497-266683 bp Feature: gene Location: 267415-269241 bp Ori: APV53217.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267715-268414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26771 5-26841 4 bp Feature: gene Location: 269354-270292 bp Feature: domain Description: AAA_10 Location: 269360-270260 bp Feature: domain Description: AAA_1 0 Location: 269360-270260 bp Feature: gene Location: 270295-272478 bp Feature: gene Location: 416745-417626 bp Ori: APV53356.1 Feature: domain Description: CcmA Location: 416748-417618 bp Feature: domain Description: CcmA Location: 41 6748-41 761 8 bp Feature: gene Location: 417880-418479 bp Ori: APV53357.1 Feature: domain Description: AcrR Location: 417898-418384 bp Feature: domain Description: AcrR Location: 41 7898-41 8384 bp Feature: gene Location: 418966-420354 bp Ori: APV53358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419287-419902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 9287-41 9902 bp Feature: domain Description: GIIM Note: maturase Location: 419959-420175 bp Feature: domain Description: GIIM Note: maturase Location: 41 9959-4201 75 bp Feature: gene Location: 420447-421883 bp Ori: APV53359.1 Feature: domain Description: CE4_DAC_u3_5s Location: 421251-421644 bp Feature: domain Description: CE4_DAC_u3_5s Location: 421 251 -421 644 bp Feature: gene Location: 422328-423584 bp Ori: APV53360.1 Feature: domain Description: PRK13354 Location: 422331-423576 bp Feature: domain Description: PRK1 3354 Location: 422331 -423576 bp Feature: gene Location: 2636358-2637503 bp Ori: APV55493.1 Feature: domain Description: FtsK Location: 2637018-2637483 bp Feature: domain Description: FtsK Location: 263701 8-2637483 bp Feature: gene Location: 2637869-2638099 bp Feature: gene Location: 2638218-2640077 bp Ori: APV55495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2638527-2639268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2638527-2639268 bp Feature: domain Description: HNHc Note: nucleases Location: 2639823-2639961 bp Feature: domain Description: HNHc Note: nucleases Location: 2639823-2639961 bp Feature: gene Location: 2640171-2640410 bp Feature: gene Location: 2640488-2641162 bp Ori: APV55497.1 Feature: domain Description: Zeta_toxin Location: 2640587-2641070 bp Feature: domain Description: Zeta_toxin Location: 2640587-2641 070 bp Feature: gene Location: 2643076-2644260 bp Ori: APV55500.1 Feature: domain Description: HTH_XRE Location: 2643106-2643250 bp Feature: domain Description: HTH_XRE Location: 26431 06-2643250 bp Feature: domain Description: Rol_Rep_N Location: 2643283-2643547 bp Feature: domain Description: Rol_Rep_N Location: 2643283-2643547 bp Feature: domain Description: Rep_trans Location: 2643571-2644183 bp Feature: domain Description: Rep_trans Location: 2643571 -26441 83 bp Feature: gene Location: 2644257-2644394 bp Ori: APV55501.1 Feature: domain Description: DUF3789 Location: 2644284-2644377 bp Feature: domain Description: DUF3789 Location: 2644284-2644377 bp Feature: gene Location: 2645140-2647050 bp Ori: APV55502.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2645473-2646211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2645473-264621 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2646766-2646931 bp Feature: domain Description: HNHc Note: nucleases Location: 2646766-2646931 bp Feature: gene Location: 2647175-2647378 bp Feature: gene Location: 2647391-2647894 bp Ori: APV55504.1 Feature: domain Description: ArdA Location: 2647409-2647880 bp Feature: domain Description: ArdA Location: 2647409-2647880 bp Feature: gene Location: 2647954-2648343 bp Ori: APV55505.1 Feature: domain Description: TcpE Location: 2647972-2648272 bp Feature: domain Description: TcpE Location: 2647972-2648272 bp Feature: gene Location: 2648330-2649880 bp Ori: APV55506.1 Feature: domain Description: AAA_10 Location: 2649659-2649842 bp Feature: domain Description: AAA_1 0 Location: 2649659-2649842 bp Feature: gene Location: 2650577-2652403 bp Ori: APV55507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2650877-2651576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2650877-2651 576 bp Feature: gene Location: 2652426-2653457 bp Feature: domain Description: AAA_10 Location: 2652522-2653422 bp Feature: domain Description: AAA_1 0 Location: 2652522-2653422 bp Feature: gene Location: 2653414-2655585 bp Feature: gene Location: 2713355-2714614 bp Ori: APV55561.1 Feature: domain Description: PRK09290 Location: 2713361-2714606 bp Feature: domain Description: PRK09290 Location: 271 3361 -271 4606 bp Feature: gene Location: 2714730-2715044 bp Ori: APV55562.1 Feature: domain Description: AlbA_2 Location: 2714769-2714940 bp Feature: domain Description: AlbA_2 Location: 271 4769-271 4940 bp Feature: gene Location: 2715190-2716686 bp Ori: APV55725.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2715598-2716054 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 271 5598-271 6054 bp Feature: gene Location: 2716864-2717343 bp Ori: APV55563.1 Feature: domain Description: DUF3841 Location: 2716873-2717248 bp Feature: domain Description: DUF3841 Location: 271 6873-271 7248 bp Feature: gene Location: 2717719-2717964 bp Ori: APV55564.1 Feature: domain Description: HTH_XRE Location: 2717770-2717956 bp Feature: domain Description: HTH_XRE Location: 271 7770-271 7956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846), CcmA (COG4133)
AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: CP018825.1 Enterococcus faecium strain ISMMS_VRE_12 plasmid p2_ISMMS_VRE12, complete sequence (45240 bp)
Overview 1 RT 1: 29130-35232 bp Neighborhood of RT #1 [29130, 35261] PinE Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 29130-29693 bp Ori: APV52645.1 Feature: domain Description: PinE Location: 29142-29688 bp Feature: domain Description: PinE Location: 2 9142 -2 9688 bp Feature: gene Location: 30336-31289 bp Ori: APV52646.1 Feature: domain Description: Tra8 Location: 30339-31266 bp Feature: domain Description: Tra8 Location: 30339-312 66 bp Feature: gene Location: 31354-32742 bp Ori: APV52663.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31615-32080 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31615-32 080 bp Feature: gene Location: 33080-34558 bp Ori: APV52647.1 Feature: domain Description: HsdM Location: 33101-34526 bp Feature: domain Description: HsdM Location: 33101-3452 6 bp Feature: gene Location: 34581-35261 bp Ori: APV52648.1 Feature: domain Description: Rve Location: 34584-35232 bp Feature: domain Description: Rve Location: 34584-352 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)