myRT

myRT report for GCA_001953255.1_ASM195325v1

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Seq: CP018830.1 Enterococcus faecium strain ISMMS_VRE_9 chromosome, complete genome (2802604 bp)
Overview 1 RT 1: 255585-272478 bp 2 RT 2: 416745-423576 bp 3 RT 3: 2630963-2650190 bp 4 RT 4: 2707960-2712561 bp Neighborhood of RT #1 [255585, 272478] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [416745, 423584] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2630963, 2650190] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2707960, 2712569] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 HTH_XRE Feature: gene Location: 255585-256712 bp Feature: domain Description: FtsK Location: 256194-256707 bp Feature: domain Description: FtsK Location: 2561 94-256707 bp Feature: gene Location: 257096-257326 bp Feature: gene Location: 257445-259304 bp Ori: APV56002.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257754-258495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257754-258495 bp Feature: domain Description: HNHc Note: nucleases Location: 259050-259188 bp Feature: domain Description: HNHc Note: nucleases Location: 259050-2591 88 bp Feature: gene Location: 259425-259682 bp Feature: gene Location: 259685-259838 bp Feature: gene Location: 259861-261066 bp Ori: APV56003.1 Feature: domain Description: HTH_XRE Location: 259906-260050 bp Feature: domain Description: HTH_XRE Location: 259906-260050 bp Feature: domain Description: Rol_Rep_N Location: 260077-260344 bp Feature: domain Description: Rol_Rep_N Location: 260077-260344 bp Feature: domain Description: Rep_trans Location: 260368-260977 bp Feature: domain Description: Rep_trans Location: 260368-260977 bp Feature: gene Location: 261850-263760 bp Ori: APV56004.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262183-262921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2621 83-262921 bp Feature: domain Description: HNHc Note: nucleases Location: 263476-263641 bp Feature: domain Description: HNHc Note: nucleases Location: 263476-263641 bp Feature: gene Location: 263921-264088 bp Feature: gene Location: 264205-264702 bp Ori: APV56006.1 Feature: domain Description: ArdA Location: 264223-264688 bp Feature: domain Description: ArdA Location: 264223-264688 bp Feature: gene Location: 264789-265181 bp Ori: APV56007.1 Feature: domain Description: TcpE Location: 264807-265107 bp Feature: domain Description: TcpE Location: 264807-2651 07 bp Feature: gene Location: 265165-266718 bp Ori: APV56008.1 Feature: domain Description: AAA_10 Location: 266497-266683 bp Feature: domain Description: AAA_1 0 Location: 266497-266683 bp Feature: gene Location: 267415-269241 bp Ori: APV56009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267715-268414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26771 5-26841 4 bp Feature: gene Location: 269354-270292 bp Feature: domain Description: AAA_10 Location: 269360-270260 bp Feature: domain Description: AAA_1 0 Location: 269360-270260 bp Feature: gene Location: 270295-272478 bp Feature: gene Location: 416745-417626 bp Ori: APV56148.1 Feature: domain Description: CcmA Location: 416748-417618 bp Feature: domain Description: CcmA Location: 41 6748-41 761 8 bp Feature: gene Location: 417880-418479 bp Ori: APV56149.1 Feature: domain Description: AcrR Location: 417898-418384 bp Feature: domain Description: AcrR Location: 41 7898-41 8384 bp Feature: gene Location: 418966-420354 bp Ori: APV56150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419287-419902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 9287-41 9902 bp Feature: domain Description: GIIM Note: maturase Location: 419959-420175 bp Feature: domain Description: GIIM Note: maturase Location: 41 9959-4201 75 bp Feature: gene Location: 420447-421883 bp Ori: APV56151.1 Feature: domain Description: CE4_DAC_u3_5s Location: 421251-421644 bp Feature: domain Description: CE4_DAC_u3_5s Location: 421 251 -421 644 bp Feature: gene Location: 422328-423584 bp Ori: APV56152.1 Feature: domain Description: PRK13354 Location: 422331-423576 bp Feature: domain Description: PRK1 3354 Location: 422331 -423576 bp Feature: gene Location: 2630963-2632108 bp Ori: APV58281.1 Feature: domain Description: FtsK Location: 2631623-2632088 bp Feature: domain Description: FtsK Location: 2631 623-2632088 bp Feature: gene Location: 2632474-2632704 bp Feature: gene Location: 2632823-2634682 bp Ori: APV58283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633132-2633873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26331 32-2633873 bp Feature: domain Description: HNHc Note: nucleases Location: 2634428-2634566 bp Feature: domain Description: HNHc Note: nucleases Location: 2634428-2634566 bp Feature: gene Location: 2634776-2635015 bp Feature: gene Location: 2635093-2635767 bp Ori: APV58285.1 Feature: domain Description: Zeta_toxin Location: 2635192-2635675 bp Feature: domain Description: Zeta_toxin Location: 26351 92-2635675 bp Feature: gene Location: 2637681-2638865 bp Ori: APV58288.1 Feature: domain Description: HTH_XRE Location: 2637711-2637855 bp Feature: domain Description: HTH_XRE Location: 263771 1 -2637855 bp Feature: domain Description: Rol_Rep_N Location: 2637888-2638152 bp Feature: domain Description: Rol_Rep_N Location: 2637888-26381 52 bp Feature: domain Description: Rep_trans Location: 2638176-2638788 bp Feature: domain Description: Rep_trans Location: 26381 76-2638788 bp Feature: gene Location: 2638862-2638999 bp Ori: APV58289.1 Feature: domain Description: DUF3789 Location: 2638889-2638982 bp Feature: domain Description: DUF3789 Location: 2638889-2638982 bp Feature: gene Location: 2639745-2641655 bp Ori: APV58290.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2640078-2640816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2640078-264081 6 bp Feature: domain Description: HNHc Note: nucleases Location: 2641371-2641536 bp Feature: domain Description: HNHc Note: nucleases Location: 2641 371 -2641 536 bp Feature: gene Location: 2641780-2641983 bp Feature: gene Location: 2641996-2642499 bp Ori: APV58292.1 Feature: domain Description: ArdA Location: 2642014-2642485 bp Feature: domain Description: ArdA Location: 264201 4-2642485 bp Feature: gene Location: 2642559-2642948 bp Ori: APV58293.1 Feature: domain Description: TcpE Location: 2642577-2642877 bp Feature: domain Description: TcpE Location: 2642577-2642877 bp Feature: gene Location: 2642935-2644485 bp Ori: APV58294.1 Feature: domain Description: AAA_10 Location: 2644264-2644447 bp Feature: domain Description: AAA_1 0 Location: 2644264-2644447 bp Feature: gene Location: 2645182-2647008 bp Ori: APV58295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2645482-2646181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2645482-26461 81 bp Feature: gene Location: 2647031-2648062 bp Feature: domain Description: AAA_10 Location: 2647127-2648027 bp Feature: domain Description: AAA_1 0 Location: 26471 27-2648027 bp Feature: gene Location: 2648019-2650190 bp Feature: gene Location: 2707960-2709219 bp Ori: APV58349.1 Feature: domain Description: PRK09290 Location: 2707966-2709211 bp Feature: domain Description: PRK09290 Location: 2707966-270921 1 bp Feature: gene Location: 2709335-2709649 bp Ori: APV58350.1 Feature: domain Description: AlbA_2 Location: 2709374-2709545 bp Feature: domain Description: AlbA_2 Location: 2709374-2709545 bp Feature: gene Location: 2709795-2711291 bp Ori: APV58513.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2710203-2710659 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 271 0203-271 0659 bp Feature: gene Location: 2711469-2711948 bp Ori: APV58351.1 Feature: domain Description: DUF3841 Location: 2711478-2711853 bp Feature: domain Description: DUF3841 Location: 271 1 478-271 1 853 bp Feature: gene Location: 2712324-2712569 bp Ori: APV58352.1 Feature: domain Description: HTH_XRE Location: 2712375-2712561 bp Feature: domain Description: HTH_XRE Location: 271 2375-271 2561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846), CcmA (COG4133)
AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: CP018831.1 Enterococcus faecium strain ISMMS_VRE_9 plasmid p2_ISMMS_VRE9, complete sequence (46747 bp)
Overview 1 RT 1: 30637-36739 bp Neighborhood of RT #1 [30637, 36768] PinE Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 30637-31200 bp Ori: APV58547.1 Feature: domain Description: PinE Location: 30649-31195 bp Feature: domain Description: PinE Location: 30649-31195 bp Feature: gene Location: 31843-32796 bp Ori: APV58548.1 Feature: domain Description: Tra8 Location: 31846-32773 bp Feature: domain Description: Tra8 Location: 31846-32 773 bp Feature: gene Location: 32861-34249 bp Ori: APV58566.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 33122-33587 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3312 2 -33587 bp Feature: gene Location: 34587-36065 bp Ori: APV58549.1 Feature: domain Description: HsdM Location: 34608-36033 bp Feature: domain Description: HsdM Location: 34608-36033 bp Feature: gene Location: 36088-36768 bp Ori: APV58550.1 Feature: domain Description: Rve Location: 36091-36739 bp Feature: domain Description: Rve Location: 36091-36739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)