myRT

myRT report for GCA_001953955.1_ASM195395v1

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Seq: CP019301.1 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II, complete sequence (708235 bp)
Overview 1 RT 1: 334182-340752 bp 2 RT 2: 533436-539558 bp Neighborhood of RT #1 [334182, 340784] PRK13877 Relaxase RVT-UG3 RVT-UG8 CMP-KDO-Synthetase Neighborhood of RT #2 [533436, 539608] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 334182-334613 bp Ori: APW33038.1 Feature: domain Description: PRK13877 Location: 334233-334503 bp Feature: domain Description: PRK1 3877 Location: 334233-334503 bp Feature: gene Location: 334597-335658 bp Ori: APW33039.1 Feature: domain Description: Relaxase Location: 334624-335341 bp Feature: domain Description: Relaxase Location: 334624-335341 bp Feature: gene Location: 336081-337271 bp Ori: APW33040.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 336372-336834 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 336372-336834 bp Feature: gene Location: 337268-339184 bp Ori: APW33041.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 337769-338213 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 337769-33821 3 bp Feature: gene Location: 339586-339771 bp Feature: gene Location: 340032-340784 bp Ori: APW33341.1 Feature: domain Description: CMP-KDO-Synthetase Location: 340038-340752 bp Feature: domain Description: CMP-KDO-Synthetase Location: 340038-340752 bp Feature: gene Location: 533436-534068 bp Ori: APW33191.1 Feature: domain Description: DUF4141 Location: 533454-533607 bp Feature: domain Description: DUF41 41 Location: 533454-533607 bp Feature: gene Location: 534291-534743 bp Feature: domain Description: Bac_Flav_CT_G Location: 534303-534723 bp Feature: domain Description: Bac_Flav_CT_G Location: 534303-534723 bp Feature: gene Location: 534833-536644 bp Ori: APW33192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535097-535919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535097-53591 9 bp Feature: domain Description: Intron_maturas2 Location: 536003-536321 bp Feature: domain Description: Intron_maturas2 Location: 536003-536321 bp Feature: domain Description: HNHc Note: nucleases Location: 536465-536615 bp Feature: domain Description: HNHc Note: nucleases Location: 536465-53661 5 bp Feature: gene Location: 537191-539276 bp Feature: domain Description: Bac_Flav_CT_G Location: 537194-538136 bp Feature: domain Description: Bac_Flav_CT_G Location: 5371 94-5381 36 bp Feature: gene Location: 539273-539608 bp Ori: APW33193.1 Feature: domain Description: DUF4133 Location: 539291-539558 bp Feature: domain Description: DUF41 33 Location: 539291 -539558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13877 (conjugal transfer transcriptional regulator TraJ), Relaxase (pfam03432), RVT-UG3, RVT-UG8, CMP-KDO-Synthetase (cd02517), DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)
DUF4133 (pfam13571)