myRT

myRT report for GCA_001955735.1_ASM195573v1

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Seq: CP019242.1 Rhodoferax antarcticus strain DSM 24876 plasmid unnamed2 sequence (107251 bp)
Overview 1 RT 1: 19206-24049 bp Neighborhood of RT #1 [19206, 24549] DUF3701 recomb_XerC RVT-GII GIIM RepB_like_N Feature: gene Location: 19206-19391 bp Feature: gene Location: 19787-21580 bp Ori: APW48629.1 Feature: domain Description: DUF3701 Location: 20195-20393 bp Feature: domain Description: DUF3701 Location: 201 95-20393 bp Feature: domain Description: recomb_XerC Location: 20822-21533 bp Feature: domain Description: recomb_XerC Location: 20822-21 533 bp Feature: gene Location: 21758-23125 bp Ori: APW48630.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22091-22706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22091 -22706 bp Feature: domain Description: GIIM Note: maturase Location: 22763-22973 bp Feature: domain Description: GIIM Note: maturase Location: 22763-22973 bp Feature: gene Location: 23197-23523 bp Feature: gene Location: 23578-24549 bp Ori: APW48631.1 Feature: domain Description: RepB_like_N Location: 23776-24049 bp Feature: domain Description: RepB_like_N Location: 23776-24049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3701 (pfam12482), recomb_XerC (TIGR02224), RVT-GII, GIIM (pfam08388), RepB_like_N (cd16405)

Seq: CP019240.1 Rhodoferax antarcticus strain DSM 24876, complete genome (3916274 bp)
Overview 1 RT 1: 458301-466429 bp 2 RT 2: 2184765-2190309 bp 3 RT 3: 3211888-3217053 bp 4 RT 4: 3287491-3292312 bp Neighborhood of RT #1 [458301, 466431] Unstab_antitox RVT-GII COG5421 COG5421 GIIM HTH_45 RVT-GII antidote_HigA HigB Neighborhood of RT #2 [2184765, 2190329] YbbJ LdcC RVT-GII GIIM PRK06997 Neighborhood of RT #3 [3211888, 3217061] DUF2721 COG2905 RVT-GII GIIM USP_Like USP_Like Neighborhood of RT #4 [3287491, 3292312] HTH_XRE ORF6N RVT-GII GIIM DUF4372 DDE_Tnp_1 RVT-GII Feature: gene Location: 458301-458525 bp Ori: APW45371.1 Feature: domain Description: Unstab_antitox Location: 458340-458493 bp Feature: domain Description: Unstab_antitox Location: 458340-458493 bp Feature: gene Location: 458630-459079 bp Feature: gene Location: 459180-459890 bp Ori: APW45373.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459450-459834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459450-459834 bp Feature: gene Location: 460025-461740 bp Ori: APW45374.1 Feature: domain Description: COG5421 Location: 460637-460862 bp Feature: domain Description: COG542 1 Location: 460637-460862 bp Feature: domain Description: COG5421 Location: 461297-461624 bp Feature: domain Description: COG542 1 Location: 4612 97-46162 4 bp Feature: gene Location: 461908-462354 bp Ori: APW45375.1 Feature: domain Description: GIIM Note: maturase Location: 461911-462118 bp Feature: domain Description: GIIM Note: maturase Location: 461911-462 118 bp Feature: gene Location: 463197-463829 bp Ori: APW45378.1 Feature: domain Description: HTH_45 Location: 463692-463794 bp Feature: domain Description: HTH_45 Location: 463692 -463794 bp Feature: gene Location: 463975-464424 bp Feature: gene Location: 464525-465744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464795-465179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464795-465179 bp Feature: gene Location: 465838-466137 bp Ori: APW45380.1 Feature: domain Description: antidote_HigA Location: 465856-466081 bp Feature: domain Description: antidote_HigA Location: 465856-466081 bp Feature: gene Location: 466150-466431 bp Ori: APW45381.1 Feature: domain Description: HigB Location: 466162-466429 bp Feature: domain Description: HigB Location: 466162 -46642 9 bp Feature: gene Location: 2184765-2185190 bp Ori: APW46732.1 Feature: domain Description: YbbJ Location: 2184771-2185137 bp Feature: domain Description: YbbJ Location: 2 184771-2 185137 bp Feature: gene Location: 2185320-2187608 bp Ori: APW48366.1 Feature: domain Description: LdcC Location: 2185743-2187591 bp Feature: domain Description: LdcC Location: 2 185743-2 187591 bp Feature: gene Location: 2187718-2189085 bp Ori: APW46733.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188051-2188666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 188051-2 188666 bp Feature: domain Description: GIIM Note: maturase Location: 2188726-2188933 bp Feature: domain Description: GIIM Note: maturase Location: 2 18872 6-2 188933 bp Feature: gene Location: 2189158-2189487 bp Feature: gene Location: 2189538-2190329 bp Ori: APW46734.1 Feature: domain Description: PRK06997 Location: 2189541-2190309 bp Feature: domain Description: PRK06997 Location: 2 189541-2 190309 bp Feature: gene Location: 3211888-3212349 bp Ori: APW47532.1 Feature: domain Description: DUF2721 Location: 3211939-3212317 bp Feature: domain Description: DUF2 72 1 Location: 32 11939-32 12 317 bp Feature: gene Location: 3212388-3214271 bp Ori: APW47533.1 Feature: domain Description: COG2905 Location: 3212436-3214257 bp Feature: domain Description: COG2 905 Location: 32 12 436-32 142 57 bp Feature: gene Location: 3214366-3215733 bp Ori: APW47534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3214699-3215314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 14699-32 15314 bp Feature: domain Description: GIIM Note: maturase Location: 3215374-3215581 bp Feature: domain Description: GIIM Note: maturase Location: 32 15374-32 15581 bp Feature: gene Location: 3215806-3216135 bp Feature: gene Location: 3216198-3217061 bp Ori: APW47535.1 Feature: domain Description: USP_Like Location: 3216216-3216678 bp Feature: domain Description: USP_Like Location: 32 162 16-32 16678 bp Feature: domain Description: USP_Like Location: 3216705-3217053 bp Feature: domain Description: USP_Like Location: 32 16705-32 17053 bp Feature: gene Location: 3287491-3287910 bp Ori: APW47591.1 Feature: domain Description: HTH_XRE Location: 3287506-3287674 bp Feature: domain Description: HTH_XRE Location: 32 87506-32 87674 bp Feature: gene Location: 3287907-3288551 bp Ori: APW47592.1 Feature: domain Description: ORF6N Location: 3287967-3288219 bp Feature: domain Description: ORF6N Location: 32 87967-32 882 19 bp Feature: gene Location: 3288845-3289606 bp Ori: APW47593.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3288851-3289187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 88851-32 89187 bp Feature: domain Description: GIIM Note: maturase Location: 3289247-3289454 bp Feature: domain Description: GIIM Note: maturase Location: 32 892 47-32 89454 bp Feature: gene Location: 3289766-3290935 bp Ori: APW47594.1 Feature: domain Description: DUF4372 Location: 3289778-3289994 bp Feature: domain Description: DUF4372 Location: 32 89778-32 89994 bp Feature: domain Description: DDE_Tnp_1 Location: 3290141-3290768 bp Feature: domain Description: DDE_Tnp_1 Location: 32 90141-32 90768 bp Feature: gene Location: 3290957-3291553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3291290-3291551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 912 90-32 91551 bp Feature: gene Location: 3291626-3291955 bp Feature: gene Location: 3292037-3292312 bp Sorry, your browser does 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Associated domains:myRT Unstab_antitox (pfam09720), RVT-GII, COG5421 (Transposase ), GIIM (pfam08388), HTH_45 (pfam14947), antidote_HigA (TIGR02607), HigB (COG4680), YbbJ (COG1585), LdcC (COG1982), PRK06997 (enoyl- reductase FabI)
DUF2721 (pfam11026), COG2905 (Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains ), USP_Like (cd00293), HTH_XRE (smart00530), ORF6N (pfam10543), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)