myRT

myRT report for GCA_001975515.1_ASM197551v1

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Seq: CP019414.1 Salmonella enterica subsp. enterica serovar Manchester str. ST278 chromosome, complete genome (4532753 bp)
Overview 1 RT 1: 3688529-3693404 bp 2 RT 2: 4281398-4288142 bp Neighborhood of RT #1 [3688529, 3693427] PRK09692 RVT-Retrons HTH_Tnp_1 CsgD Neighborhood of RT #2 [4281398, 4288153] groES groEL RVT_N RVT-GII DUF4156 YjeJ Feature: gene Location: 3688529-3688708 bp Feature: domain Description: PRK09692 Location: 3688535-3688700 bp Feature: domain Description: PRK09692 Location: 3688535-3688700 bp Feature: gene Location: 3689078-3690031 bp Feature: gene Location: 3690018-3690968 bp Ori: APY78935.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3690117-3690708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36901 1 7-3690708 bp Feature: gene Location: 3691194-3691533 bp Feature: domain Description: HTH_Tnp_1 Location: 3691212-3691326 bp Feature: domain Description: HTH_Tnp_1 Location: 3691 21 2-3691 326 bp Feature: gene Location: 3692810-3693427 bp Ori: APY78936.1 Feature: domain Description: CsgD Location: 3693230-3693404 bp Feature: domain Description: CsgD Location: 3693230-3693404 bp Feature: gene Location: 4281398-4281691 bp Ori: APY79415.1 Gene: groES Feature: domain Description: groES Location: 4281401-4281686 bp Feature: domain Description: groES Location: 4281 401 -4281 686 bp Feature: gene Location: 4281735-4283381 bp Ori: APY79416.1 Feature: domain Description: groEL Location: 4281741-4283367 bp Feature: domain Description: groEL Location: 4281 741 -4283367 bp Feature: gene Location: 4284490-4286138 bp Feature: domain Description: RVT_N Location: 4284541-4284784 bp Feature: domain Description: RVT_N Location: 4284541 -4284784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4284829-4285198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4284829-42851 98 bp Feature: gene Location: 4286895-4287248 bp Ori: APY79417.1 Feature: domain Description: DUF4156 Location: 4286964-4287240 bp Feature: domain Description: DUF41 56 Location: 4286964-4287240 bp Feature: gene Location: 4287296-4288153 bp Ori: APY79418.1 Feature: domain Description: YjeJ Location: 4287299-4288142 bp Feature: domain Description: YjeJ Location: 4287299-42881 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, HTH_Tnp_1 (pfam01527), CsgD (COG2771), groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, DUF4156 (pfam13698), YjeJ (pfam15922)