myRT

myRT report for GCA_001983935.1_ASM198393v1

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Seq: CP017641.1 Fuerstia marisgermanicae strain NH11 chromosome, complete genome (8920478 bp)
Overview 1 RT 1: 1185064-1189642 bp 2 RT 2: 1857766-1865727 bp 3 RT 3: 2021552-2026135 bp 4 RT 4: 2041384-2048661 bp 5 RT 5: 2171166-2175285 bp 6 RT 6: 2379649-2387426 bp 7 RT 7: 4899300-4907167 bp 8 RT 8: 5012205-5018487 bp Neighborhood of RT #1 [1185064, 1189851] RVT-GII GIIM Y2_Tnp Neighborhood of RT #2 [1857766, 1865727] FAD_oxidored CBM6-CBM35-CBM36_like_2 RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #3 [2021552, 2026539] GIIM RVT-GII GIIM DUF1963 Neighborhood of RT #4 [2041384, 2049647] integrase_gron integrase_gron RVT-GII GIIM RVT-GII GIIM PinE Zn_ribbon_recom Neighborhood of RT #5 [2171166, 2175285] RVT-GII GIIM Neighborhood of RT #6 [2379649, 2387426] M1_APN_like RVT-Retrons RVT-Retrons PSCyt1 PSCyt2 PSD1 Neighborhood of RT #7 [4899300, 4907310] Ceramidase_alk RVT-GII GIIM RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Neighborhood of RT #8 [5012205, 5018507] FGGY_D-XK_EcXK-like RVT-Retrons PSCyt2 PSD1 PSD1 DUF1501 Feature: gene Location: 1185064-1185294 bp Feature: gene Location: 1186120-1186542 bp Feature: gene Location: 1186580-1188265 bp Ori: APZ91289.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187210-1187900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8721 0-1 1 87900 bp Feature: domain Description: GIIM Note: maturase Location: 1187987-1188182 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 87987-1 1 881 82 bp Feature: gene Location: 1188748-1188975 bp Feature: gene Location: 1189138-1189851 bp Ori: APZ91291.1 Feature: domain Description: Y2_Tnp Location: 1189150-1189642 bp Feature: domain Description: Y2_Tnp Location: 1 1 891 50-1 1 89642 bp Feature: gene Location: 1857766-1859961 bp Ori: APZ91785.1 Feature: domain Description: FAD_oxidored Location: 1857988-1859455 bp Feature: domain Description: FAD_oxidored Location: 1 857988-1 859455 bp Feature: domain Description: CBM6-CBM35-CBM36_like_2 Location: 1859545-1859947 bp Feature: domain Description: CBM6-CBM35-CBM36_like_2 Location: 1 859545-1 859947 bp Feature: gene Location: 1860461-1860571 bp Feature: gene Location: 1861065-1862492 bp Ori: APZ91787.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1861422-1862037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 861 422-1 862037 bp Feature: domain Description: GIIM Note: maturase Location: 1862088-1862304 bp Feature: domain Description: GIIM Note: maturase Location: 1 862088-1 862304 bp Feature: gene Location: 1862674-1864359 bp Ori: APZ91788.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1863304-1863994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 863304-1 863994 bp Feature: domain Description: GIIM Note: maturase Location: 1864081-1864276 bp Feature: domain Description: GIIM Note: maturase Location: 1 864081 -1 864276 bp Feature: gene Location: 1864788-1865276 bp Feature: gene Location: 1865464-1865727 bp Feature: gene Location: 2021552-2021809 bp Feature: gene Location: 2022207-2022560 bp Ori: APZ91920.1 Feature: domain Description: GIIM Note: maturase Location: 2022210-2022372 bp Feature: domain Description: GIIM Note: maturase Location: 202221 0-2022372 bp Feature: gene Location: 2022742-2024427 bp Ori: APZ91921.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023372-2024062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023372-2024062 bp Feature: domain Description: GIIM Note: maturase Location: 2024149-2024344 bp Feature: domain Description: GIIM Note: maturase Location: 20241 49-2024344 bp Feature: gene Location: 2024975-2025313 bp Feature: gene Location: 2025652-2026539 bp Ori: APZ91923.1 Feature: domain Description: DUF1963 Location: 2025904-2026135 bp Feature: domain Description: DUF1 963 Location: 2025904-20261 35 bp Feature: gene Location: 2041384-2042319 bp Ori: APZ91936.1 Gene: xerD_7 Feature: domain Description: integrase_gron Location: 2041426-2041954 bp Feature: domain Description: integrase_gron Location: 2041 426-2041 954 bp Feature: domain Description: integrase_gron Location: 2041999-2042227 bp Feature: domain Description: integrase_gron Location: 2041 999-2042227 bp Feature: gene Location: 2042445-2042756 bp Feature: gene Location: 2043175-2044602 bp Ori: APZ91938.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043532-2044147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043532-20441 47 bp Feature: domain Description: GIIM Note: maturase Location: 2044198-2044414 bp Feature: domain Description: GIIM Note: maturase Location: 20441 98-204441 4 bp Feature: gene Location: 2044784-2046469 bp Ori: APZ91939.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2045414-2046104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204541 4-20461 04 bp Feature: domain Description: GIIM Note: maturase Location: 2046191-2046386 bp Feature: domain Description: GIIM Note: maturase Location: 20461 91 -2046386 bp Feature: gene Location: 2047382-2047561 bp Feature: gene Location: 2047554-2049647 bp Ori: APZ91941.1 Feature: domain Description: PinE Location: 2047590-2048175 bp Feature: domain Description: PinE Location: 2047590-20481 75 bp Feature: domain Description: Zn_ribbon_recom Location: 2048532-2048661 bp Feature: domain Description: Zn_ribbon_recom Location: 2048532-2048661 bp Feature: gene Location: 2171166-2171357 bp Feature: gene Location: 2171708-2172046 bp Feature: gene Location: 2172084-2173769 bp Ori: APZ92030.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172714-2173404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7271 4-21 73404 bp Feature: domain Description: GIIM Note: maturase Location: 2173491-2173686 bp Feature: domain Description: GIIM Note: maturase Location: 21 73491 -21 73686 bp Feature: gene Location: 2174019-2174714 bp Feature: gene Location: 2175097-2175285 bp Feature: gene Location: 2379649-2380287 bp Feature: gene Location: 2380292-2382751 bp Ori: APZ92183.1 Gene: pepN Feature: domain Description: M1_APN_like Location: 2380514-2382023 bp Feature: domain Description: M1 _APN_like Location: 238051 4-2382023 bp Feature: gene Location: 2383340-2384101 bp Ori: APZ92184.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2383820-2384027 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2383820-2384027 bp Feature: gene Location: 2384047-2384691 bp Ori: APZ92185.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2384050-2384467 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2384050-2384467 bp Feature: gene Location: 2384725-2387133 bp Ori: APZ92186.1 Feature: domain Description: PSCyt1 Location: 2384896-2385076 bp Feature: domain Description: PSCyt1 Location: 2384896-2385076 bp Feature: domain Description: PSCyt2 Location: 2385274-2385898 bp Feature: domain Description: PSCyt2 Location: 2385274-2385898 bp Feature: domain Description: PSD1 Location: 2386309-2387014 bp Feature: domain Description: PSD1 Location: 2386309-238701 4 bp Feature: gene Location: 2387220-2387426 bp Feature: gene Location: 4899300-4900679 bp Ori: APZ94030.1 Feature: domain Description: Ceramidase_alk Location: 4899396-4900098 bp Feature: domain Description: Ceramidase_alk Location: 4899396-4900098 bp Feature: gene Location: 4900918-4901643 bp Feature: gene Location: 4901640-4903067 bp Ori: APZ94032.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4901997-4902612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4901 997-490261 2 bp Feature: domain Description: GIIM Note: maturase Location: 4902663-4902879 bp Feature: domain Description: GIIM Note: maturase Location: 4902663-4902879 bp Feature: gene Location: 4903249-4904934 bp Ori: APZ94033.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903879-4904569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903879-4904569 bp Feature: domain Description: GIIM Note: maturase Location: 4904656-4904851 bp Feature: domain Description: GIIM Note: maturase Location: 4904656-4904851 bp Feature: gene Location: 4905197-4906246 bp Feature: gene Location: 4906288-4907310 bp Ori: APZ94035.1 Gene: xerD_13 Feature: domain Description: Phage_int_SAM_4 Location: 4906372-4906618 bp Feature: domain Description: Phage_int_SAM_4 Location: 4906372-490661 8 bp Feature: domain Description: INT_IntI_C Location: 4906654-4907167 bp Feature: domain Description: INT_IntI_C Location: 4906654-49071 67 bp Feature: gene Location: 5012205-5012357 bp Feature: gene Location: 5012342-5013940 bp Ori: APZ94111.1 Gene: xylB Feature: domain Description: FGGY_D-XK_EcXK-like Location: 5012423-5013899 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 501 2423-501 3899 bp Feature: gene Location: 5014400-5015434 bp Ori: APZ94112.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5014691-5015252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 501 4691 -501 5252 bp Feature: gene Location: 5015537-5017168 bp Ori: APZ94113.1 Feature: domain Description: PSCyt2 Location: 5015678-5016248 bp Feature: domain Description: PSCyt2 Location: 501 5678-501 6248 bp Feature: domain Description: PSD1 Location: 5016416-5016770 bp Feature: domain Description: PSD1 Location: 501 641 6-501 6770 bp Feature: domain Description: PSD1 Location: 5016872-5017073 bp Feature: domain Description: PSD1 Location: 501 6872-501 7073 bp Feature: gene Location: 5017173-5018507 bp Ori: APZ94114.1 Feature: domain Description: DUF1501 Location: 5017302-5018487 bp Feature: domain Description: DUF1 501 Location: 501 7302-501 8487 bp 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Associated domains:myRT RVT-GII, GIIM (pfam08388), Y2_Tnp (pfam04986), FAD_oxidored (pfam12831), CBM6-CBM35-CBM36_like_2 (cd14488), DUF1963 (pfam09234), integrase_gron (TIGR02249), PinE (COG1961), Zn_ribbon_recom (pfam13408), M1_APN_like (cd09604)
RVT-Retrons, PSCyt1 (pfam07635), PSCyt2 (pfam07583), PSD1 (pfam07587), Ceramidase_alk (pfam04734), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), FGGY_D-XK_EcXK-like (cd07808), DUF1501 (pfam07394)