myRT

myRT report for GCA_001984465.1_ASM198446v1

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Seq: CP019469.1 Clostridioides difficile strain LEM1 chromosome, complete genome (4191506 bp)
Overview 1 RT 1: 490276-497158 bp 2 RT 2: 1838141-1845214 bp 3 RT 3: 1848664-1855939 bp 4 RT 4: 2242264-2247607 bp Neighborhood of RT #1 [490276, 497158] Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC Neighborhood of RT #2 [1838141, 1845214] DUF2089 TpcC RVT-GII Intron_maturas2 HNHc Lysozyme_like Spr Neighborhood of RT #3 [1848664, 1856082] ArdA PldB Hydrolase_4 RVT-GII Rol_Rep_N Rep_trans FtsK Neighborhood of RT #4 [2242264, 2247607] Hydrolase_4 TpcC RVT-GII Intron_maturas2 HNHc Lysozyme_like Spr Feature: gene Location: 490276-492141 bp Feature: gene Location: 492138-493070 bp Feature: domain Description: Lysozyme_like Location: 492285-492747 bp Feature: domain Description: Lysozyme_like Location: 492285-492747 bp Feature: domain Description: Spr Location: 492780-493053 bp Feature: domain Description: Spr Location: 492780-493053 bp Feature: gene Location: 493691-495487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493958-494768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493958-494768 bp Feature: domain Description: Intron_maturas2 Location: 494834-495173 bp Feature: domain Description: Intron_maturas2 Location: 494834-4951 73 bp Feature: domain Description: HNHc Note: nucleases Location: 495305-495461 bp Feature: domain Description: HNHc Note: nucleases Location: 495305-495461 bp Feature: gene Location: 495815-496633 bp Feature: domain Description: TpcC Location: 495956-496625 bp Feature: domain Description: TpcC Location: 495956-496625 bp Feature: gene Location: 496832-497158 bp Feature: gene Location: 1838141-1838455 bp Feature: domain Description: DUF2089 Location: 1838186-1838414 bp Feature: domain Description: DUF2089 Location: 1 8381 86-1 83841 4 bp Feature: gene Location: 1838526-1839431 bp Feature: domain Description: TpcC Location: 1838751-1839423 bp Feature: domain Description: TpcC Location: 1 838751 -1 839423 bp Feature: gene Location: 1839676-1841472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839943-1840753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 839943-1 840753 bp Feature: domain Description: Intron_maturas2 Location: 1840819-1841158 bp Feature: domain Description: Intron_maturas2 Location: 1 84081 9-1 841 1 58 bp Feature: domain Description: HNHc Note: nucleases Location: 1841290-1841446 bp Feature: domain Description: HNHc Note: nucleases Location: 1 841 290-1 841 446 bp Feature: gene Location: 1842093-1843025 bp Feature: domain Description: Lysozyme_like Location: 1842240-1842702 bp Feature: domain Description: Lysozyme_like Location: 1 842240-1 842702 bp Feature: domain Description: Spr Location: 1842735-1843008 bp Feature: domain Description: Spr Location: 1 842735-1 843008 bp Feature: gene Location: 1843022-1845214 bp Feature: gene Location: 1848664-1849146 bp Feature: domain Description: ArdA Location: 1848703-1849132 bp Feature: domain Description: ArdA Location: 1 848703-1 8491 32 bp Feature: gene Location: 1849479-1850081 bp Feature: domain Description: PldB Location: 1849647-1849764 bp Feature: domain Description: PldB Location: 1 849647-1 849764 bp Feature: domain Description: Hydrolase_4 Location: 1849764-1850037 bp Feature: domain Description: Hydrolase_4 Location: 1 849764-1 850037 bp Feature: gene Location: 1850640-1852403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850973-1851711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 850973-1 851 71 1 bp Feature: gene Location: 1853287-1854249 bp Feature: domain Description: Rol_Rep_N Location: 1853293-1853518 bp Feature: domain Description: Rol_Rep_N Location: 1 853293-1 85351 8 bp Feature: domain Description: Rep_trans Location: 1853542-1854157 bp Feature: domain Description: Rep_trans Location: 1 853542-1 8541 57 bp Feature: gene Location: 1854688-1856082 bp Feature: domain Description: FtsK Location: 1855357-1855939 bp Feature: domain Description: FtsK Location: 1 855357-1 855939 bp Feature: gene Location: 2242264-2243121 bp Feature: domain Description: Hydrolase_4 Location: 2242342-2243068 bp Feature: domain Description: Hydrolase_4 Location: 2242342-2243068 bp Feature: gene Location: 2243334-2243990 bp Feature: domain Description: TpcC Location: 2243376-2243982 bp Feature: domain Description: TpcC Location: 2243376-2243982 bp Feature: gene Location: 2244091-2245887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2244358-2245168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2244358-22451 68 bp Feature: domain Description: Intron_maturas2 Location: 2245234-2245573 bp Feature: domain Description: Intron_maturas2 Location: 2245234-2245573 bp Feature: domain Description: HNHc Note: nucleases Location: 2245705-2245861 bp Feature: domain Description: HNHc Note: nucleases Location: 2245705-2245861 bp Feature: gene Location: 2246507-2247007 bp Feature: domain Description: Lysozyme_like Location: 2246513-2246684 bp Feature: domain Description: Lysozyme_like Location: 224651 3-2246684 bp Feature: domain Description: Spr Location: 2246717-2246990 bp Feature: domain Description: Spr Location: 224671 7-2246990 bp Feature: gene Location: 2247368-2247607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TpcC (pfam12642), DUF2089 (pfam09862), ArdA (pfam07275), PldB (COG2267), Hydrolase_4 (pfam12146)
Rol_Rep_N (pfam18106), Rep_trans (pfam02486), FtsK (COG1674)