myRT

myRT report for GCA_001999225.1_ASM199922v1

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Seq: CP019628.1 Pseudoalteromonas aliena strain EH1, complete genome (4594697 bp)
Overview 1 RT 1: 375602-381988 bp 2 RT 2: 690152-695411 bp 3 RT 3: 697958-703616 bp 4 RT 4: 974676-979648 bp 5 RT 5: 2896862-2903772 bp 6 RT 6: 3046603-3052098 bp 7 RT 7: 3835047-3840452 bp Neighborhood of RT #1 [375602, 382080] PBP2_CrgA_like KOG2100 RVT-Retrons ABC_ATPase couple_hipB Neighborhood of RT #2 [690152, 695411] RVT-GII GIIM DUF772 DDE_Tnp_1_6 Neighborhood of RT #3 [697958, 703616] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM DUF772 DDE_Tnp_1_6 Neighborhood of RT #4 [974676, 979648] DUF3581 RAYT RAYT RVT-GII Neighborhood of RT #5 [2896862, 2903795] int RVT-Retrons PAS PRK13558 PRK11107 Neighborhood of RT #6 [3046603, 3052115] RVT-GII GIIM DUF772 DDE_Tnp_1_6 Neighborhood of RT #7 [3835047, 3840457] DUF772 DDE_Tnp_1_6 RVT-GII GIIM GreA_GreB Feature: gene Location: 375602-375955 bp Ori: AQP98619.1 Feature: domain Description: PBP2_CrgA_like Location: 375617-375920 bp Feature: domain Description: PBP2_CrgA_like Location: 37561 7-375920 bp Feature: gene Location: 376417-378765 bp Ori: AQP98620.1 Feature: domain Description: KOG2100 Location: 376735-378751 bp Feature: domain Description: KOG21 00 Location: 376735-378751 bp Feature: gene Location: 379265-380227 bp Ori: AQP98621.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 379385-379943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 379385-379943 bp Feature: gene Location: 380220-381587 bp Ori: AQP98622.1 Feature: domain Description: ABC_ATPase Location: 380244-380982 bp Feature: domain Description: ABC_ATPase Location: 380244-380982 bp Feature: gene Location: 381793-382080 bp Ori: AQP98623.1 Feature: domain Description: couple_hipB Location: 381820-381988 bp Feature: domain Description: couple_hipB Location: 381 820-381 988 bp Feature: gene Location: 690152-690832 bp Feature: gene Location: 690974-691642 bp Feature: gene Location: 692287-693576 bp Ori: AQP98864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692542-693211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692542-69321 1 bp Feature: domain Description: GIIM Note: maturase Location: 693304-693493 bp Feature: domain Description: GIIM Note: maturase Location: 693304-693493 bp Feature: gene Location: 693806-695344 bp Ori: AQP98865.1 Feature: domain Description: DUF772 Location: 693971-694178 bp Feature: domain Description: DUF772 Location: 693971 -6941 78 bp Feature: domain Description: DDE_Tnp_1_6 Location: 694940-695327 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 694940-695327 bp Feature: gene Location: 695226-695411 bp Feature: gene Location: 697958-698284 bp Feature: gene Location: 698320-699588 bp Ori: AQP98867.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 698359-698827 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 698359-698827 bp Feature: domain Description: Transposase_20 Location: 699157-699409 bp Feature: domain Description: Transposase_20 Location: 6991 57-699409 bp Feature: gene Location: 700478-701767 bp Ori: AQP98868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700733-701402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700733-701 402 bp Feature: domain Description: GIIM Note: maturase Location: 701495-701684 bp Feature: domain Description: GIIM Note: maturase Location: 701 495-701 684 bp Feature: gene Location: 702053-703549 bp Ori: AQP98869.1 Feature: domain Description: DUF772 Location: 702176-702383 bp Feature: domain Description: DUF772 Location: 7021 76-702383 bp Feature: domain Description: DDE_Tnp_1_6 Location: 703145-703532 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 7031 45-703532 bp Feature: gene Location: 703431-703616 bp Feature: gene Location: 974676-975377 bp Ori: AQP99087.1 Feature: domain Description: DUF3581 Location: 974682-975315 bp Feature: domain Description: DUF3581 Location: 974682-97531 5 bp Feature: gene Location: 976054-977028 bp Ori: AQP99088.1 Feature: domain Description: RAYT Location: 976093-976303 bp Feature: domain Description: RAYT Location: 976093-976303 bp Feature: domain Description: RAYT Location: 976459-976657 bp Feature: domain Description: RAYT Location: 976459-976657 bp Feature: gene Location: 977119-978117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977374-978043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977374-978043 bp Feature: gene Location: 978767-979246 bp Feature: gene Location: 979274-979648 bp Feature: gene Location: 2896862-2897089 bp Feature: domain Description: int Location: 2896877-2897078 bp Feature: domain Description: int Location: 2896877-2897078 bp Feature: gene Location: 2897086-2897826 bp Feature: gene Location: 2897826-2899013 bp Ori: AQQ00654.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2897973-2898543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2897973-2898543 bp Feature: gene Location: 2899622-2900219 bp Feature: gene Location: 2900490-2903795 bp Ori: AQQ00655.1 Feature: domain Description: PAS Location: 2901360-2901744 bp Feature: domain Description: PAS Location: 2901 360-2901 744 bp Feature: domain Description: PRK13558 Location: 2901753-2902152 bp Feature: domain Description: PRK1 3558 Location: 2901 753-29021 52 bp Feature: domain Description: PRK11107 Location: 2902158-2903772 bp Feature: domain Description: PRK1 1 1 07 Location: 29021 58-2903772 bp Feature: gene Location: 3046603-3047139 bp Feature: gene Location: 3047263-3048060 bp Feature: gene Location: 3049013-3050302 bp Ori: AQQ00769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3049268-3049937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3049268-3049937 bp Feature: domain Description: GIIM Note: maturase Location: 3050030-3050219 bp Feature: domain Description: GIIM Note: maturase Location: 3050030-305021 9 bp Feature: gene Location: 3050589-3051161 bp Feature: domain Description: DUF772 Location: 3050712-3050919 bp Feature: domain Description: DUF772 Location: 305071 2-305091 9 bp Feature: gene Location: 3051366-3052115 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3051711-3052098 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 3051 71 1 -3052098 bp Feature: gene Location: 3835047-3835232 bp Feature: gene Location: 3835114-3836640 bp Feature: domain Description: DUF772 Location: 3835237-3835444 bp Feature: domain Description: DUF772 Location: 3835237-3835444 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3836236-3836623 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 3836236-3836623 bp Feature: gene Location: 3836927-3838216 bp Ori: AQQ01338.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3837182-3837851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38371 82-3837851 bp Feature: domain Description: GIIM Note: maturase Location: 3837944-3838133 bp Feature: domain Description: GIIM Note: maturase Location: 3837944-38381 33 bp Feature: gene Location: 3838862-3839626 bp Feature: gene Location: 3839981-3840457 bp Ori: AQQ01340.1 Feature: domain Description: GreA_GreB Location: 3840218-3840452 bp Feature: domain Description: GreA_GreB Location: 384021 8-3840452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like (cd08422), KOG2100 (KOG2100, Dipeptidyl aminopeptidase ), RVT-Retrons, ABC_ATPase (pfam09818), couple_hipB (TIGR03070), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), DEDD_Tnp_IS110 (pfam01548)
Transposase_20 (pfam02371), DUF3581 (pfam12119), RAYT (COG1943), int (PHA02601), PAS (smart00091), PRK13558 (bacterio-opsin activator; Provisional), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), GreA_GreB (pfam01272)