myRT

myRT report for GCA_001999905.1_ASM199990v1

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Seq: CP019640.1 Planococcus maritimus strain Y42 chromosome, complete genome (3718896 bp)
Overview 1 RT 1: 611538-616354 bp 2 RT 2: 3372407-3377460 bp 3 RT 3: 3701820-3706604 bp Neighborhood of RT #1 [611538, 616362] DUF4181 SLATT_5 RVT-AbiA CLB_0814_fam Neighborhood of RT #2 [3372407, 3377460] SsuE PcpA_C_like RVT-GII GIIM HNHc PcpA_N_like Neighborhood of RT #3 [3701820, 3706681] rpsR PRK06751 RVT-GII GIIM HNHc rpsF DUF3267 Feature: gene Location: 611538-611969 bp Feature: domain Description: DUF4181 Location: 611622-611934 bp Feature: domain Description: DUF41 81 Location: 61 1 622-61 1 934 bp Feature: gene Location: 612752-613429 bp Feature: domain Description: SLATT_5 Location: 612794-613391 bp Feature: domain Description: SLATT_5 Location: 61 2794-61 3391 bp Feature: gene Location: 613444-614877 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 613843-614296 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 61 3843-61 4296 bp Feature: gene Location: 615099-615320 bp Feature: gene Location: 616126-616362 bp Feature: domain Description: CLB_0814_fam Location: 616138-616354 bp Feature: domain Description: CLB_081 4_fam Location: 61 61 38-61 6354 bp Feature: gene Location: 3372407-3373039 bp Feature: domain Description: SsuE Location: 3372479-3372998 bp Feature: domain Description: SsuE Location: 3372479-3372998 bp Feature: gene Location: 3373041-3373721 bp Feature: domain Description: PcpA_C_like Location: 3373209-3373674 bp Feature: domain Description: PcpA_C_like Location: 3373209-3373674 bp Feature: gene Location: 3373732-3375654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374026-3374740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374026-3374740 bp Feature: domain Description: GIIM Note: maturase Location: 3374854-3375073 bp Feature: domain Description: GIIM Note: maturase Location: 3374854-3375073 bp Feature: domain Description: HNHc Note: nucleases Location: 3375406-3375574 bp Feature: domain Description: HNHc Note: nucleases Location: 3375406-3375574 bp Feature: gene Location: 3376387-3376935 bp Feature: domain Description: PcpA_N_like Location: 3376405-3376777 bp Feature: domain Description: PcpA_N_like Location: 3376405-3376777 bp Feature: gene Location: 3377224-3377460 bp Feature: gene Location: 3701820-3702056 bp Feature: domain Description: rpsR Location: 3701829-3702045 bp Feature: domain Description: rpsR Location: 3701 829-3702045 bp Feature: gene Location: 3702108-3702512 bp Feature: domain Description: PRK06751 Location: 3702111-3702510 bp Feature: domain Description: PRK06751 Location: 37021 1 1 -370251 0 bp Feature: gene Location: 3702716-3704638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3703010-3703724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370301 0-3703724 bp Feature: domain Description: GIIM Note: maturase Location: 3703838-3704057 bp Feature: domain Description: GIIM Note: maturase Location: 3703838-3704057 bp Feature: domain Description: HNHc Note: nucleases Location: 3704390-3704558 bp Feature: domain Description: HNHc Note: nucleases Location: 3704390-3704558 bp Feature: gene Location: 3705563-3705850 bp Feature: domain Description: rpsF Location: 3705566-3705848 bp Feature: domain Description: rpsF Location: 3705566-3705848 bp Feature: gene Location: 3706118-3706681 bp Feature: domain Description: DUF3267 Location: 3706289-3706604 bp Feature: domain Description: DUF3267 Location: 3706289-3706604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4181 (pfam13789), SLATT_5 (pfam18160), RVT-AbiA, CLB_0814_fam (TIGR04540), SsuE (COG0431), PcpA_C_like (cd08347), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PcpA_N_like (cd08346)
rpsR (PRK00391), PRK06751 (single-stranded DNA-binding protein; Provisional), rpsF (PRK14074), DUF3267 (pfam11667)

Seq: CP019641.1 Planococcus maritimus strain Y42 plasmid unnamed1, complete sequence (329482 bp)
Overview 1 RT 1: 135872-141628 bp 2 RT 2: 174685-179613 bp 3 RT 3: 184935-192008 bp Neighborhood of RT #1 [135872, 141651] Prok-E2_D RVT-GII HNHc PRTRC_ThiF Neighborhood of RT #2 [174685, 179726] RVT-GII GIIM HNHc PRK07275 DUF3846 Neighborhood of RT #3 [184935, 192019] RVT-GII GIIM HNHc DEXHc_HARP_SMARCAL1 DEXHc_HARP_SMARCAL1 HepA Imm64 Feature: gene Location: 135872-136393 bp Feature: gene Location: 136390-137112 bp Feature: domain Description: Prok-E2_D Location: 136771-137065 bp Feature: domain Description: Prok-E2 _D Location: 136771-137065 bp Feature: gene Location: 137947-139758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138253-138949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382 53-138949 bp Feature: domain Description: HNHc Note: nucleases Location: 139495-139636 bp Feature: domain Description: HNHc Note: nucleases Location: 139495-139636 bp Feature: gene Location: 139968-140783 bp Feature: gene Location: 140794-141651 bp Feature: domain Description: PRTRC_ThiF Location: 140851-141628 bp Feature: domain Description: PRTRC_ThiF Location: 140851-14162 8 bp Feature: gene Location: 174685-175065 bp Feature: gene Location: 175324-175722 bp Feature: gene Location: 176676-178598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176970-177684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176970-177684 bp Feature: domain Description: GIIM Note: maturase Location: 177798-178017 bp Feature: domain Description: GIIM Note: maturase Location: 177798-178017 bp Feature: domain Description: HNHc Note: nucleases Location: 178350-178518 bp Feature: domain Description: HNHc Note: nucleases Location: 178350-178518 bp Feature: gene Location: 178775-179209 bp Feature: domain Description: PRK07275 Location: 178781-179207 bp Feature: domain Description: PRK072 75 Location: 178781-1792 07 bp Feature: gene Location: 179313-179726 bp Feature: domain Description: DUF3846 Location: 179376-179613 bp Feature: domain Description: DUF3846 Location: 179376-179613 bp Feature: gene Location: 184935-185852 bp Feature: gene Location: 185960-186124 bp Feature: gene Location: 186595-188466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186898-187603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186898-187603 bp Feature: domain Description: GIIM Note: maturase Location: 187693-187882 bp Feature: domain Description: GIIM Note: maturase Location: 187693-187882 bp Feature: domain Description: HNHc Note: nucleases Location: 188218-188386 bp Feature: domain Description: HNHc Note: nucleases Location: 1882 18-188386 bp Feature: gene Location: 188695-191118 bp Feature: domain Description: DEXHc_HARP_SMARCAL1 Location: 188755-188977 bp Feature: domain Description: DEXHc_HARP_SMARCAL1 Location: 188755-188977 bp Feature: domain Description: DEXHc_HARP_SMARCAL1 Location: 189277-189637 bp Feature: domain Description: DEXHc_HARP_SMARCAL1 Location: 1892 77-189637 bp Feature: domain Description: HepA Location: 190099-190573 bp Feature: domain Description: HepA Location: 190099-190573 bp Feature: gene Location: 191138-192019 bp Feature: domain Description: Imm64 Location: 191759-192008 bp Feature: domain Description: Imm64 Location: 191759-192 008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prok-E2_D (pfam14460), RVT-GII, HNHc (smart00507), PRTRC_ThiF (TIGR03736), GIIM (pfam08388), PRK07275 (single-stranded DNA-binding protein; Provisional), DUF3846 (pfam12957), DEXHc_HARP_SMARCAL1 (cd18010), HepA (COG0553), Imm64 (pfam15600)