myRT

myRT report for GCA_002003285.1_ASM200328v1

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Seq: CP016086.1 Clostridium saccharobutylicum strain NCP 200, complete genome (5108287 bp)
Overview 1 RT 1: 1601745-1605719 bp 2 RT 2: 2236222-2244902 bp 3 RT 3: 2359260-2366669 bp 4 RT 4: 5006143-5011037 bp Neighborhood of RT #1 [1601745, 1605719] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #2 [2236222, 2244940] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #3 [2359260, 2367169] Enpp RVT-Retrons UvrD UvrD Neighborhood of RT #4 [5006143, 5011039] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 1601745-1601951 bp Ori: AQR89714.1 Feature: domain Description: DDE_Tnp_1 Location: 1601775-1601913 bp Feature: domain Description: DDE_Tnp_1 Location: 1 601 775-1 601 91 3 bp Feature: gene Location: 1602043-1602393 bp Feature: gene Location: 1602864-1603502 bp Ori: AQR89716.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603200-1603383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603200-1 603383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603386-1603491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603386-1 603491 bp Feature: gene Location: 1603936-1604343 bp Feature: gene Location: 1605537-1605719 bp Feature: gene Location: 2236222-2239269 bp Feature: gene Location: 2239271-2241079 bp Feature: gene Location: 2241076-2242581 bp Ori: AQR90262.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2241712-2242354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2241 71 2-2242354 bp Feature: gene Location: 2243169-2244194 bp Ori: AQR90263.1 Feature: domain Description: DUF1835 Location: 2243184-2243553 bp Feature: domain Description: DUF1 835 Location: 22431 84-2243553 bp Feature: domain Description: DUF3658 Location: 2243643-2243955 bp Feature: domain Description: DUF3658 Location: 2243643-2243955 bp Feature: gene Location: 2244413-2244940 bp Ori: AQR90264.1 Gene: sigW_1 Feature: domain Description: Sig70_famx3 Location: 2244419-2244902 bp Feature: domain Description: Sig70_famx3 Location: 224441 9-2244902 bp Feature: gene Location: 2359260-2359796 bp Feature: gene Location: 2360367-2361671 bp Ori: AQR90365.1 Feature: domain Description: Enpp Location: 2360385-2361621 bp Feature: domain Description: Enpp Location: 2360385-2361 621 bp Feature: gene Location: 2361973-2363097 bp Ori: AQR90366.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2362189-2362747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23621 89-2362747 bp Feature: gene Location: 2363309-2364316 bp Feature: gene Location: 2364602-2367169 bp Ori: AQR90368.1 Feature: domain Description: UvrD Location: 2365124-2366252 bp Feature: domain Description: UvrD Location: 23651 24-2366252 bp Feature: domain Description: UvrD Location: 2366429-2366669 bp Feature: domain Description: UvrD Location: 2366429-2366669 bp Feature: gene Location: 5006143-5007411 bp Ori: AQR92667.1 Feature: domain Description: DDE_Tnp_1 Location: 5006494-5007109 bp Feature: domain Description: DDE_Tnp_1 Location: 5006494-50071 09 bp Feature: gene Location: 5007512-5008327 bp Ori: AQR92668.1 Feature: domain Description: PHA02517 Location: 5007758-5008307 bp Feature: domain Description: PHA0251 7 Location: 5007758-5008307 bp Feature: gene Location: 5008853-5010388 bp Ori: AQR92669.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 5008925-5009168 bp Feature: domain Description: RVT_N Location: 5008925-50091 68 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009213-5009873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500921 3-5009873 bp Feature: domain Description: GIIM Note: maturase Location: 5009924-5010161 bp Feature: domain Description: GIIM Note: maturase Location: 5009924-501 01 61 bp Feature: domain Description: rve_2 Location: 5010305-5010380 bp Feature: domain Description: rve_2 Location: 501 0305-501 0380 bp Feature: gene Location: 5010462-5010728 bp Ori: AQR92670.1 Feature: domain Description: plantaricin Location: 5010483-5010726 bp Feature: domain Description: plantaricin Location: 501 0483-501 0726 bp Feature: gene Location: 5010773-5011039 bp Ori: AQR92671.1 Feature: domain Description: plantaricin Location: 5010794-5011037 bp Feature: domain Description: plantaricin Location: 501 0794-501 1 037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655)
GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539)