myRT

myRT report for GCA_002003365.1_ASM200336v1

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Seq: CP016091.1 Clostridium saccharobutylicum strain NCP 258, complete genome (4950933 bp)
Overview 1 RT 1: 482614-490233 bp 2 RT 2: 1624724-1628698 bp 3 RT 3: 2322510-2331190 bp 4 RT 4: 4850389-4854764 bp Neighborhood of RT #1 [482614, 490235] HTH_28 HTH_28 HTH_28 PHA02517 RVT_N RVT-GII GIIM MATE_MepA_like PepO Neighborhood of RT #2 [1624724, 1628698] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #3 [2322510, 2331228] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #4 [4850389, 4854766] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 482614-483294 bp Ori: AQS08385.1 Feature: domain Description: HTH_28 Location: 482647-482782 bp Feature: domain Description: HTH_28 Location: 482647-482782 bp Feature: domain Description: HTH_28 Location: 482833-482941 bp Feature: domain Description: HTH_28 Location: 482833-482941 bp Feature: domain Description: HTH_28 Location: 483010-483166 bp Feature: domain Description: HTH_28 Location: 48301 0-4831 66 bp Feature: gene Location: 483597-483932 bp Ori: AQS08386.1 Feature: domain Description: PHA02517 Location: 483603-483912 bp Feature: domain Description: PHA0251 7 Location: 483603-48391 2 bp Feature: gene Location: 484459-485997 bp Ori: AQS08387.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 484531-484774 bp Feature: domain Description: RVT_N Location: 484531 -484774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484819-485476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48481 9-485476 bp Feature: domain Description: GIIM Note: maturase Location: 485530-485767 bp Feature: domain Description: GIIM Note: maturase Location: 485530-485767 bp Feature: gene Location: 486504-486728 bp Ori: AQS08388.1 Feature: domain Description: MATE_MepA_like Location: 486510-486684 bp Feature: domain Description: MATE_MepA_like Location: 48651 0-486684 bp Feature: gene Location: 488175-490235 bp Ori: AQS08389.1 Gene: pepO_1 Feature: domain Description: PepO Location: 488307-490233 bp Feature: domain Description: PepO Location: 488307-490233 bp Feature: gene Location: 1624724-1624930 bp Ori: AQS09346.1 Feature: domain Description: DDE_Tnp_1 Location: 1624754-1624892 bp Feature: domain Description: DDE_Tnp_1 Location: 1 624754-1 624892 bp Feature: gene Location: 1625022-1625372 bp Feature: gene Location: 1625843-1626481 bp Ori: AQS09348.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1626179-1626362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6261 79-1 626362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1626365-1626470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 626365-1 626470 bp Feature: gene Location: 1626915-1627322 bp Feature: gene Location: 1628516-1628698 bp Feature: gene Location: 2322510-2325557 bp Feature: gene Location: 2325559-2327367 bp Feature: gene Location: 2327364-2328869 bp Ori: AQS09967.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2328000-2328642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2328000-2328642 bp Feature: gene Location: 2329457-2330482 bp Ori: AQS09968.1 Feature: domain Description: DUF1835 Location: 2329472-2329841 bp Feature: domain Description: DUF1 835 Location: 2329472-2329841 bp Feature: domain Description: DUF3658 Location: 2329931-2330243 bp Feature: domain Description: DUF3658 Location: 2329931 -2330243 bp Feature: gene Location: 2330701-2331228 bp Ori: AQS09969.1 Gene: sigW_1 Feature: domain Description: Sig70_famx3 Location: 2330707-2331190 bp Feature: domain Description: Sig70_famx3 Location: 2330707-2331 1 90 bp Feature: gene Location: 4850389-4851138 bp Ori: AQS12175.1 Feature: domain Description: DDE_Tnp_1 Location: 4850740-4851088 bp Feature: domain Description: DDE_Tnp_1 Location: 4850740-4851 088 bp Feature: gene Location: 4851239-4852054 bp Ori: AQS12176.1 Feature: domain Description: PHA02517 Location: 4851485-4852034 bp Feature: domain Description: PHA0251 7 Location: 4851 485-4852034 bp Feature: gene Location: 4852580-4854115 bp Ori: AQS12177.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 4852652-4852895 bp Feature: domain Description: RVT_N Location: 4852652-4852895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4852940-4853600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4852940-4853600 bp Feature: domain Description: GIIM Note: maturase Location: 4853651-4853888 bp Feature: domain Description: GIIM Note: maturase Location: 4853651 -4853888 bp Feature: domain Description: rve_2 Location: 4854032-4854107 bp Feature: domain Description: rve_2 Location: 4854032-48541 07 bp Feature: gene Location: 4854189-4854455 bp Ori: AQS12178.1 Feature: domain Description: plantaricin Location: 4854210-4854453 bp Feature: domain Description: plantaricin Location: 485421 0-4854453 bp Feature: gene Location: 4854500-4854766 bp Ori: AQS12179.1 Feature: domain Description: plantaricin Location: 4854521-4854764 bp Feature: domain Description: plantaricin Location: 4854521 -4854764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MATE_MepA_like (cd13143), PepO (COG3590), DDE_Tnp_1 (pfam01609), RVT-Retrons, DUF1835 (pfam08874)
DUF3658 (pfam12395), Sig70_famx3 (TIGR02954), rve_2 (pfam13333), plantaricin (NF000539)