myRT

myRT report for GCA_002003385.1_ASM200338v1

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Seq: CP016092.1 Clostridium saccharobutylicum strain NCP 195, complete genome (5108176 bp)
Overview 1 RT 1: 1602356-1606330 bp 2 RT 2: 2236833-2245513 bp 3 RT 3: 2359871-2367280 bp 4 RT 4: 5006753-5011647 bp Neighborhood of RT #1 [1602356, 1606330] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #2 [2236833, 2245551] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #3 [2359871, 2367780] Enpp RVT-Retrons UvrD UvrD Neighborhood of RT #4 [5006753, 5011649] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 1602356-1602562 bp Ori: AQS13602.1 Feature: domain Description: DDE_Tnp_1 Location: 1602386-1602524 bp Feature: domain Description: DDE_Tnp_1 Location: 1 602386-1 602524 bp Feature: gene Location: 1602654-1603004 bp Feature: gene Location: 1603475-1604113 bp Ori: AQS13604.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603811-1603994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60381 1 -1 603994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603997-1604102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603997-1 6041 02 bp Feature: gene Location: 1604547-1604954 bp Feature: gene Location: 1606148-1606330 bp Feature: gene Location: 2236833-2239880 bp Feature: gene Location: 2239882-2241690 bp Feature: gene Location: 2241687-2243192 bp Ori: AQS14151.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2242323-2242965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2242323-2242965 bp Feature: gene Location: 2243780-2244805 bp Ori: AQS14152.1 Feature: domain Description: DUF1835 Location: 2243795-2244164 bp Feature: domain Description: DUF1 835 Location: 2243795-22441 64 bp Feature: domain Description: DUF3658 Location: 2244254-2244566 bp Feature: domain Description: DUF3658 Location: 2244254-2244566 bp Feature: gene Location: 2245024-2245551 bp Ori: AQS14153.1 Gene: sigW_1 Feature: domain Description: Sig70_famx3 Location: 2245030-2245513 bp Feature: domain Description: Sig70_famx3 Location: 2245030-224551 3 bp Feature: gene Location: 2359871-2360407 bp Feature: gene Location: 2360978-2362282 bp Ori: AQS14254.1 Feature: domain Description: Enpp Location: 2360996-2362232 bp Feature: domain Description: Enpp Location: 2360996-2362232 bp Feature: gene Location: 2362584-2363708 bp Ori: AQS14255.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2362800-2363358 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2362800-2363358 bp Feature: gene Location: 2363920-2364927 bp Feature: gene Location: 2365213-2367780 bp Ori: AQS14257.1 Feature: domain Description: UvrD Location: 2365735-2366863 bp Feature: domain Description: UvrD Location: 2365735-2366863 bp Feature: domain Description: UvrD Location: 2367040-2367280 bp Feature: domain Description: UvrD Location: 2367040-2367280 bp Feature: gene Location: 5006753-5008021 bp Ori: AQS16552.1 Feature: domain Description: DDE_Tnp_1 Location: 5007104-5007719 bp Feature: domain Description: DDE_Tnp_1 Location: 50071 04-500771 9 bp Feature: gene Location: 5008122-5008937 bp Ori: AQS16553.1 Feature: domain Description: PHA02517 Location: 5008368-5008917 bp Feature: domain Description: PHA0251 7 Location: 5008368-500891 7 bp Feature: gene Location: 5009463-5010998 bp Ori: AQS16554.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 5009535-5009778 bp Feature: domain Description: RVT_N Location: 5009535-5009778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009823-5010483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009823-501 0483 bp Feature: domain Description: GIIM Note: maturase Location: 5010534-5010771 bp Feature: domain Description: GIIM Note: maturase Location: 501 0534-501 0771 bp Feature: domain Description: rve_2 Location: 5010915-5010990 bp Feature: domain Description: rve_2 Location: 501 091 5-501 0990 bp Feature: gene Location: 5011072-5011338 bp Ori: AQS16555.1 Feature: domain Description: plantaricin Location: 5011093-5011336 bp Feature: domain Description: plantaricin Location: 501 1 093-501 1 336 bp Feature: gene Location: 5011383-5011649 bp Ori: AQS16556.1 Feature: domain Description: plantaricin Location: 5011404-5011647 bp Feature: domain Description: plantaricin Location: 501 1 404-501 1 647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655)
GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539)