myRT

myRT report for GCA_002005145.1_ASM200514v1

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Seq: CP019698.1 Desulfotomaculum ferrireducens strain GSS09 chromosome, complete genome (3240180 bp)
Overview 1 RT 1: 347248-354295 bp 2 RT 2: 908392-911865 bp 3 RT 3: 1639018-1647808 bp 4 RT 4: 1743831-1755914 bp 5 RT 5: 1774616-1780893 bp 6 RT 6: 1788089-1793872 bp 7 RT 7: 2229038-2231617 bp 8 RT 8: 2320492-2329466 bp 9 RT 9: 2338012-2342870 bp Neighborhood of RT #1 [347248, 354306] clpC RVT-GII GIIM PRK11823 PRK13482 Neighborhood of RT #2 [908392, 911865] PHA02517 InsE RVT-GII GIIM Neighborhood of RT #3 [1639018, 1647810] FbpA KOG2030 P-type_ATPase_cation RVT-GII GIIM Tar Neighborhood of RT #4 [1743831, 1756237] MATE_SpoVB_like PRK12740 RVT-GII GIIM COG3666 DDE_Tnp_1_6 PRK03830 RVT-GII COG2452 tspaseT_teng_N tspaseT_teng_C Neighborhood of RT #5 [1774616, 1780904] PRK05434 eno RVT-GII GIIM HdrA Neighborhood of RT #6 [1788089, 1793877] sulfite_reductase_like RVT-GII GIIM FeFe_hydrog_B1 ddl Neighborhood of RT #7 [2229038, 2231619] DDE_Tnp_IS66_C RVT-GII COG2316 Neighborhood of RT #8 [2320492, 2329466] COG4832 BltR2 FusA FusA NYN_YacP RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII Neighborhood of RT #9 [2338012, 2342983] SoxW RVT-GII YraQ YurZ Feature: gene Location: 347248-349698 bp Ori: AQS57931.1 Feature: domain Description: clpC Location: 347251-349660 bp Feature: domain Description: clpC Location: 347251 -349660 bp Feature: gene Location: 349815-350099 bp Feature: gene Location: 350202-351614 bp Ori: AQS57932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350550-351165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350550-351 1 65 bp Feature: domain Description: GIIM Note: maturase Location: 351219-351435 bp Feature: domain Description: GIIM Note: maturase Location: 351 21 9-351 435 bp Feature: gene Location: 351862-353208 bp Ori: AQS57933.1 Feature: domain Description: PRK11823 Location: 351868-353200 bp Feature: domain Description: PRK1 1 823 Location: 351 868-353200 bp Feature: gene Location: 353221-354306 bp Ori: AQS57934.1 Feature: domain Description: PRK13482 Location: 353248-354295 bp Feature: domain Description: PRK1 3482 Location: 353248-354295 bp Feature: gene Location: 908392-909321 bp Ori: AQS58435.1 Feature: domain Description: PHA02517 Location: 908566-909268 bp Feature: domain Description: PHA0251 7 Location: 908566-909268 bp Feature: gene Location: 909312-909620 bp Ori: AQS58436.1 Feature: domain Description: InsE Location: 909321-909573 bp Feature: domain Description: InsE Location: 909321 -909573 bp Feature: gene Location: 909678-910373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909708-909960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909708-909960 bp Feature: domain Description: GIIM Note: maturase Location: 910065-910278 bp Feature: domain Description: GIIM Note: maturase Location: 91 0065-91 0278 bp Feature: gene Location: 910550-910789 bp Feature: gene Location: 911137-911865 bp Feature: gene Location: 1639018-1640802 bp Ori: AQS59037.1 Feature: domain Description: FbpA Location: 1639030-1640398 bp Feature: domain Description: FbpA Location: 1 639030-1 640398 bp Feature: domain Description: KOG2030 Location: 1640431-1640641 bp Feature: domain Description: KOG2030 Location: 1 640431 -1 640641 bp Feature: gene Location: 1640959-1643709 bp Ori: AQS59038.1 Feature: domain Description: P-type_ATPase_cation Location: 1641031-1643635 bp Feature: domain Description: P-type_ATPase_cation Location: 1 641 031 -1 643635 bp Feature: gene Location: 1644087-1645499 bp Ori: AQS59039.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1644435-1645050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 644435-1 645050 bp Feature: domain Description: GIIM Note: maturase Location: 1645104-1645320 bp Feature: domain Description: GIIM Note: maturase Location: 1 6451 04-1 645320 bp Feature: gene Location: 1645602-1645886 bp Feature: gene Location: 1646014-1647810 bp Ori: AQS59040.1 Feature: domain Description: Tar Location: 1646440-1647808 bp Feature: domain Description: Tar Location: 1 646440-1 647808 bp Feature: gene Location: 1743831-1745381 bp Ori: AQS59130.1 Feature: domain Description: MATE_SpoVB_like Location: 1743864-1745154 bp Feature: domain Description: MATE_SpoVB_like Location: 1 743864-1 7451 54 bp Feature: gene Location: 1745672-1747684 bp Ori: AQS59131.1 Feature: domain Description: PRK12740 Location: 1745717-1747643 bp Feature: domain Description: PRK1 2740 Location: 1 74571 7-1 747643 bp Feature: gene Location: 1747766-1749178 bp Ori: AQS59132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1748114-1748729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7481 1 4-1 748729 bp Feature: domain Description: GIIM Note: maturase Location: 1748783-1748999 bp Feature: domain Description: GIIM Note: maturase Location: 1 748783-1 748999 bp Feature: gene Location: 1749281-1749565 bp Feature: gene Location: 1749713-1751125 bp Feature: domain Description: COG3666 Location: 1749782-1750220 bp Feature: domain Description: COG3666 Location: 1 749782-1 750220 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1750736-1751090 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 750736-1 751 090 bp Feature: gene Location: 1751423-1751638 bp Ori: AQS59133.1 Feature: domain Description: PRK03830 Location: 1751429-1751633 bp Feature: domain Description: PRK03830 Location: 1 751 429-1 751 633 bp Feature: gene Location: 1752364-1753748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1752712-1753048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75271 2-1 753048 bp Feature: gene Location: 1753900-1754565 bp Ori: AQS59134.1 Feature: domain Description: COG2452 Location: 1753912-1754488 bp Feature: domain Description: COG2452 Location: 1 75391 2-1 754488 bp Feature: gene Location: 1754528-1756237 bp Ori: AQS59135.1 Feature: domain Description: tspaseT_teng_N Location: 1754681-1754846 bp Feature: domain Description: tspaseT_teng_N Location: 1 754681 -1 754846 bp Feature: domain Description: tspaseT_teng_C Location: 1755686-1755914 bp Feature: domain Description: tspaseT_teng_C Location: 1 755686-1 75591 4 bp Feature: gene Location: 1774616-1776169 bp Ori: AQS59150.1 Feature: domain Description: PRK05434 Location: 1774628-1776158 bp Feature: domain Description: PRK05434 Location: 1 774628-1 7761 58 bp Feature: gene Location: 1776377-1777660 bp Ori: AQS59151.1 Feature: domain Description: eno Location: 1776380-1777655 bp Feature: domain Description: eno Location: 1 776380-1 777655 bp Feature: gene Location: 1778598-1780010 bp Ori: AQS59152.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1778946-1779561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 778946-1 779561 bp Feature: domain Description: GIIM Note: maturase Location: 1779615-1779831 bp Feature: domain Description: GIIM Note: maturase Location: 1 77961 5-1 779831 bp Feature: gene Location: 1780113-1780397 bp Feature: gene Location: 1780446-1780904 bp Ori: AQS59154.1 Feature: domain Description: HdrA Location: 1780452-1780893 bp Feature: domain Description: HdrA Location: 1 780452-1 780893 bp Feature: gene Location: 1788089-1788922 bp Ori: AQS59160.1 Feature: domain Description: sulfite_reductase_like Location: 1788152-1788887 bp Feature: domain Description: sulfite_reductase_like Location: 1 7881 52-1 788887 bp Feature: gene Location: 1789015-1789299 bp Feature: gene Location: 1789402-1790814 bp Ori: AQS59161.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1789750-1790365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 789750-1 790365 bp Feature: domain Description: GIIM Note: maturase Location: 1790419-1790635 bp Feature: domain Description: GIIM Note: maturase Location: 1 79041 9-1 790635 bp Feature: gene Location: 1791264-1792652 bp Ori: AQS59162.1 Feature: domain Description: FeFe_hydrog_B1 Location: 1791282-1792593 bp Feature: domain Description: FeFe_hydrog_B1 Location: 1 791 282-1 792593 bp Feature: gene Location: 1792939-1793877 bp Ori: AQS59163.1 Feature: domain Description: ddl Location: 1792948-1793872 bp Feature: domain Description: ddl Location: 1 792948-1 793872 bp Feature: gene Location: 2229038-2229148 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2229041-2229149 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2229041 -22291 49 bp Feature: gene Location: 2229204-2229485 bp Feature: gene Location: 2229616-2230428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229808-2230423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229808-2230423 bp Feature: gene Location: 2230687-2230971 bp Feature: gene Location: 2231071-2231619 bp Ori: AQS59534.1 Feature: domain Description: COG2316 Location: 2231077-2231617 bp Feature: domain Description: COG231 6 Location: 2231 077-2231 61 7 bp Feature: gene Location: 2320492-2320977 bp Ori: AQS59608.1 Feature: domain Description: COG4832 Location: 2320504-2320570 bp Feature: domain Description: COG4832 Location: 2320504-2320570 bp Feature: domain Description: BltR2 Location: 2320765-2320954 bp Feature: domain Description: BltR2 Location: 2320765-2320954 bp Feature: gene Location: 2320992-2323634 bp Ori: AQS59609.1 Feature: domain Description: FusA Location: 2321010-2321439 bp Feature: domain Description: FusA Location: 2321 01 0-2321 439 bp Feature: domain Description: FusA Location: 2321472-2322777 bp Feature: domain Description: FusA Location: 2321 472-2322777 bp Feature: domain Description: NYN_YacP Location: 2323134-2323605 bp Feature: domain Description: NYN_YacP Location: 23231 34-2323605 bp Feature: gene Location: 2323929-2324621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323932-2324172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323932-23241 72 bp Feature: domain Description: GIIM Note: maturase Location: 2324226-2324442 bp Feature: domain Description: GIIM Note: maturase Location: 2324226-2324442 bp Feature: gene Location: 2324716-2325726 bp Ori: AQS59610.1 Feature: domain Description: Phage_int_SAM_1 Location: 2324761-2325004 bp Feature: domain Description: Phage_int_SAM_1 Location: 2324761 -2325004 bp Feature: domain Description: INT_RitC_C_like Location: 2325094-2325646 bp Feature: domain Description: INT_RitC_C_like Location: 2325094-2325646 bp Feature: gene Location: 2325713-2326699 bp Ori: AQS59611.1 Feature: domain Description: INT_RitB_C_like Location: 2326049-2326637 bp Feature: domain Description: INT_RitB_C_like Location: 2326049-2326637 bp Feature: gene Location: 2326692-2327927 bp Ori: AQS59612.1 Feature: domain Description: xerS Location: 2327019-2327169 bp Feature: domain Description: xerS Location: 232701 9-23271 69 bp Feature: domain Description: INT_RitA_C_like Location: 2327361-2327892 bp Feature: domain Description: INT_RitA_C_like Location: 2327361 -2327892 bp Feature: gene Location: 2328082-2328816 bp Ori: AQS59613.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2328430-2328811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2328430-232881 1 bp Feature: gene Location: 2328919-2329203 bp Feature: gene Location: 2329275-2329466 bp Feature: gene Location: 2338012-2338233 bp Ori: AQS59626.1 Feature: domain Description: SoxW Location: 2338081-2338228 bp Feature: domain Description: SoxW Location: 2338081 -2338228 bp Feature: gene Location: 2338282-2338611 bp Feature: gene Location: 2338813-2340252 bp Ori: AQS60591.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339041-2339662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339041 -2339662 bp Feature: gene Location: 2341578-2342534 bp Ori: AQS59628.1 Feature: domain Description: YraQ Location: 2341602-2342529 bp Feature: domain Description: YraQ Location: 2341 602-2342529 bp Feature: gene Location: 2342723-2342983 bp Ori: AQS59629.1 Feature: domain Description: YurZ Location: 2342735-2342870 bp Feature: domain Description: YurZ Location: 2342735-2342870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpC, RVT-GII, GIIM (pfam08388), PRK11823 (DNA repair protein RadA; Provisional), PRK13482 (DNA integrity scanning protein DisA; Provisional), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), FbpA (pfam05833), KOG2030 (KOG2030, Predicted RNA-binding protein ), P-type_ATPase_cation (cd07543)
Tar (COG0840), MATE_SpoVB_like (cd13124), PRK12740 (elongation factor G-like protein EF-G2), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), PRK03830 (small acid-soluble spore protein Tlp; Provisional), COG2452 (Predicted site-specific integrase-resolvase ), tspaseT_teng_N (TIGR01765), tspaseT_teng_C (TIGR01766), PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase)
eno (TIGR01060), HdrA (COG1148), sulfite_reductase_like (cd06221), FeFe_hydrog_B1 (TIGR04105), ddl (PRK01966), DDE_Tnp_IS66_C (pfam13817), COG2316 (Predicted hydrolase, HD superfamily ), COG4832 (Uncharacterized protein ), BltR2 (COG4978), FusA (COG0480)
NYN_YacP (pfam05991), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitA_C_like (cd01188), SoxW (COG2143), YraQ (COG0701), YurZ (COG0599)