myRT

myRT report for GCA_002005305.1_ASM200530v1

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Seq: CP014782.1 Shewanella psychrophila strain WP2, complete genome (6353406 bp)
Overview 1 RT 1: 3230888-3236434 bp 2 RT 2: 3908850-3914324 bp 3 RT 3: 4903831-4911655 bp 4 RT 4: 5510901-5517027 bp Neighborhood of RT #1 [3230888, 3236439] S4 PseudoU_synth_RluF Acetyltransf_10 RVT-GII GIIM PRK10119 Neighborhood of RT #2 [3908850, 3914326] Zn_Tnp_IS91 Y2_Tnp RVT-GII GIIM Barstar_like integrase_gron Neighborhood of RT #3 [4903831, 4911663] AlkB PRK15001 RVT_N RVT-GII GIIM COG3547 acid_phos_Burk Neighborhood of RT #4 [5510901, 5517041] InsE PHA02517 RVT_N RVT-GII GIIM RimI MsbA_rel Feature: gene Location: 3230888-3231652 bp Ori: AQS37985.1 Feature: domain Description: S4 Location: 3230915-3231014 bp Feature: domain Description: S4 Location: 323091 5-3231 01 4 bp Feature: domain Description: PseudoU_synth_RluF Location: 3231128-3231611 bp Feature: domain Description: PseudoU_synth_RluF Location: 3231 1 28-3231 61 1 bp Feature: gene Location: 3232289-3232804 bp Ori: AQS37986.1 Feature: domain Description: Acetyltransf_10 Location: 3232457-3232745 bp Feature: domain Description: Acetyltransf_1 0 Location: 3232457-3232745 bp Feature: gene Location: 3233341-3234687 bp Ori: AQS37987.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3233623-3234241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3233623-3234241 bp Feature: domain Description: GIIM Note: maturase Location: 3234289-3234493 bp Feature: domain Description: GIIM Note: maturase Location: 3234289-3234493 bp Feature: gene Location: 3235287-3235688 bp Feature: gene Location: 3235813-3236439 bp Ori: AQS37989.1 Feature: domain Description: PRK10119 Location: 3235855-3236434 bp Feature: domain Description: PRK1 01 1 9 Location: 3235855-3236434 bp Feature: gene Location: 3908850-3909962 bp Ori: AQS38525.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3908868-3909141 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3908868-39091 41 bp Feature: domain Description: Y2_Tnp Location: 3909267-3909747 bp Feature: domain Description: Y2_Tnp Location: 3909267-3909747 bp Feature: gene Location: 3910232-3910627 bp Feature: gene Location: 3911246-3912586 bp Ori: AQS38527.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3911528-3912146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 1 528-391 21 46 bp Feature: domain Description: GIIM Note: maturase Location: 3912194-3912398 bp Feature: domain Description: GIIM Note: maturase Location: 391 21 94-391 2398 bp Feature: gene Location: 3912716-3913087 bp Ori: AQS38528.1 Feature: domain Description: Barstar_like Location: 3912782-3913028 bp Feature: domain Description: Barstar_like Location: 391 2782-391 3028 bp Feature: gene Location: 3913370-3914326 bp Ori: AQS38529.1 Feature: domain Description: integrase_gron Location: 3913385-3914324 bp Feature: domain Description: integrase_gron Location: 391 3385-391 4324 bp Feature: gene Location: 4903831-4904484 bp Ori: AQS39412.1 Feature: domain Description: AlkB Location: 4903909-4904449 bp Feature: domain Description: AlkB Location: 4903909-4904449 bp Feature: gene Location: 4904643-4905905 bp Ori: AQS39413.1 Feature: domain Description: PRK15001 Location: 4904679-4905801 bp Feature: domain Description: PRK1 5001 Location: 4904679-4905801 bp Feature: gene Location: 4906325-4907881 bp Ori: AQS39414.1 Feature: domain Description: RVT_N Location: 4906457-4906700 bp Feature: domain Description: RVT_N Location: 4906457-4906700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4906748-4907372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4906748-4907372 bp Feature: domain Description: GIIM Note: maturase Location: 4907429-4907657 bp Feature: domain Description: GIIM Note: maturase Location: 4907429-4907657 bp Feature: gene Location: 4909111-4909536 bp Ori: AQS39415.1 Feature: domain Description: COG3547 Location: 4909123-4909507 bp Feature: domain Description: COG3547 Location: 49091 23-4909507 bp Feature: gene Location: 4909966-4911663 bp Ori: AQS39416.1 Feature: domain Description: acid_phos_Burk Location: 4910173-4911655 bp Feature: domain Description: acid_phos_Burk Location: 491 01 73-491 1 655 bp Feature: gene Location: 5510901-5511188 bp Ori: AQS39971.1 Feature: domain Description: InsE Location: 5510910-5511180 bp Feature: domain Description: InsE Location: 551 091 0-551 1 1 80 bp Feature: gene Location: 5511245-5512057 bp Ori: AQS39972.1 Feature: domain Description: PHA02517 Location: 5511251-5512028 bp Feature: domain Description: PHA0251 7 Location: 551 1 251 -551 2028 bp Feature: gene Location: 5512126-5513598 bp Ori: AQS39973.1 Feature: domain Description: RVT_N Location: 5512174-5512417 bp Feature: domain Description: RVT_N Location: 551 21 74-551 241 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5512462-5513089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 2462-551 3089 bp Feature: domain Description: GIIM Note: maturase Location: 5513146-5513374 bp Feature: domain Description: GIIM Note: maturase Location: 551 31 46-551 3374 bp Feature: gene Location: 5514017-5514430 bp Ori: AQS39974.1 Feature: domain Description: RimI Location: 5514080-5514401 bp Feature: domain Description: RimI Location: 551 4080-551 4401 bp Feature: gene Location: 5515137-5517041 bp Ori: AQS39975.1 Feature: domain Description: MsbA_rel Location: 5515245-5517027 bp Feature: domain Description: MsbA_rel Location: 551 5245-551 7027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S4 (smart00363), PseudoU_synth_RluF (cd02554), Acetyltransf_10 (pfam13673), RVT-GII, GIIM (pfam08388), PRK10119 (putative hydrolase; Provisional), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Barstar_like (cl01048), integrase_gron (TIGR02249)
AlkB (COG3145), PRK15001 (23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG), RVT_N (pfam13655), COG3547 (Transposase ), acid_phos_Burk (TIGR03397), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RimI (COG0456), MsbA_rel (TIGR02204)