myRT

myRT report for GCA_002012085.1_ASM201208v1

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Seq: CP018991.1 Escherichia coli strain Ecol_AZ146 chromosome, complete genome (5434745 bp)
Overview 1 RT 1: 524674-528232 bp 2 RT 2: 5271047-5275227 bp 3 RT 3: 5301577-5306475 bp Neighborhood of RT #1 [524674, 528603] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Neighborhood of RT #2 [5271047, 5275229] hlyE RVT-GII PRK10276 umuC Neighborhood of RT #3 [5301577, 5306475] RVT-Retrons Feature: gene Location: 524674-524851 bp Feature: gene Location: 525096-525647 bp Ori: AQV71847.1 Feature: domain Description: SLATT_5 Location: 525105-525618 bp Feature: domain Description: SLATT_5 Location: 5251 05-52561 8 bp Feature: gene Location: 525619-526995 bp Ori: AQV71848.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 525853-526459 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 525853-526459 bp Feature: gene Location: 527108-527692 bp Ori: AQV71849.1 Feature: domain Description: Caudo_TAP Location: 527324-527681 bp Feature: domain Description: Caudo_TAP Location: 527324-527681 bp Feature: gene Location: 527701-528603 bp Ori: AQV71850.1 Feature: domain Description: Macro_Appr_pase Location: 527719-528232 bp Feature: domain Description: Macro_Appr_pase Location: 52771 9-528232 bp Feature: gene Location: 5271047-5271367 bp Ori: AQV76414.1 Feature: domain Description: hlyE Location: 5271050-5271365 bp Feature: domain Description: hlyE Location: 5271 050-5271 365 bp Feature: gene Location: 5271728-5271979 bp Feature: gene Location: 5271979-5273463 bp Ori: AQV76416.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5272381-5273071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5272381 -5273071 bp Feature: gene Location: 5273542-5273961 bp Ori: AQV76417.1 Feature: domain Description: PRK10276 Location: 5273545-5273959 bp Feature: domain Description: PRK1 0276 Location: 5273545-5273959 bp Feature: gene Location: 5273961-5275229 bp Ori: AQV76418.1 Feature: domain Description: umuC Location: 5273964-5275227 bp Feature: domain Description: umuC Location: 5273964-5275227 bp Feature: gene Location: 5301577-5301807 bp Feature: gene Location: 5302022-5302261 bp Feature: gene Location: 5302832-5304589 bp Ori: AQV76443.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5302976-5303594 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5302976-5303594 bp Feature: gene Location: 5304836-5305963 bp Feature: gene Location: 5305960-5306475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900), hlyE (PRK11376), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), RVT-Retrons

Seq: CP018989.1 Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_KPC, complete sequence (85865 bp)
Overview 1 RT 1: 59023-62765 bp Neighborhood of RT #1 [59023, 62782] ArdC RVT-GII PRK10276 Feature: gene Location: 59023-59988 bp Ori: AQV71101.1 Feature: domain Description: ArdC Location: 59149-59983 bp Feature: domain Description: ArdC Location: 59149-59983 bp Feature: gene Location: 60196-60465 bp Feature: gene Location: 60458-61942 bp Ori: AQV71103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60860-61550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60860-61550 bp Feature: gene Location: 61942-62193 bp Feature: gene Location: 62351-62782 bp Ori: AQV71105.1 Feature: domain Description: PRK10276 Location: 62402-62765 bp Feature: domain Description: PRK102 76 Location: 62 402 -62 765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP018990.1 Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_1, complete sequence (150994 bp)
Overview 1 RT 1: 47637-51666 bp 2 RT 2: 142859-146182 bp Neighborhood of RT #1 [47637, 51671] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Neighborhood of RT #2 [142859, 146182] autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 47637-47936 bp Feature: gene Location: 47938-48144 bp Feature: gene Location: 48822-50723 bp Ori: AQV71195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49089-49920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49089-49920 bp Feature: domain Description: Intron_maturas2 Location: 50034-50292 bp Feature: domain Description: Intron_maturas2 Location: 5003 4-50292 bp Feature: domain Description: HNHc Note: nucleases Location: 50466-50628 bp Feature: domain Description: HNHc Note: nucleases Location: 50466-50628 bp Feature: gene Location: 50873-51370 bp Ori: AQV71196.1 Feature: domain Description: PRK13732 Location: 50876-51368 bp Feature: domain Description: PRK13 73 2 Location: 50876-513 68 bp Feature: gene Location: 51438-51671 bp Ori: AQV71197.1 Feature: domain Description: DUF905 Location: 51468-51666 bp Feature: domain Description: DUF905 Location: 51468-51666 bp Feature: gene Location: 142859-143428 bp Ori: AQV71329.1 Feature: domain Description: autotrans_barl Location: 142940-143375 bp Feature: domain Description: autotrans_barl Location: 142940-143 3 75 bp Feature: gene Location: 143431-143919 bp Ori: AQV71303.1 Feature: domain Description: PHA02517 Location: 143440-143917 bp Feature: domain Description: PHA02517 Location: 143 440-143 917 bp Feature: gene Location: 143994-145517 bp Ori: AQV71304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144267-144999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144267-144999 bp Feature: domain Description: GIIM Note: maturase Location: 145074-145272 bp Feature: domain Description: GIIM Note: maturase Location: 145074-145272 bp Feature: gene Location: 145471-145896 bp Feature: gene Location: 145931-146182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)