myRT

myRT report for GCA_002012225.1_ASM201222v1

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Seq: CP019029.1 Escherichia coli strain Ecol_881 (5262974 bp)
Overview 1 RT 1: 82746-86728 bp 2 RT 2: 3350897-3354779 bp 3 RT 3: 4140679-4145003 bp 4 RT 4: 4753074-4759189 bp Neighborhood of RT #1 [82746, 86754] Asparaginase_2 RVT-GII DcuC Neighborhood of RT #2 [3350897, 3354784] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #3 [4140679, 4145003] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #4 [4753074, 4759191] PRK09362 Zn_peptidase RVT_N RVT-GII GIIM HNHc YpfJ TmcA Feature: gene Location: 82746-83768 bp Ori: AQV70754.1 Feature: domain Description: Asparaginase_2 Location: 82827-83760 bp Feature: domain Description: Asparaginase_2 Location: 82827-83760 bp Feature: gene Location: 83935-84137 bp Feature: gene Location: 84301-84747 bp Ori: AQV65901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84607-84709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84607-84709 bp Feature: gene Location: 84972-85178 bp Feature: gene Location: 85393-86754 bp Ori: AQV65902.1 Feature: domain Description: DcuC Location: 85396-86728 bp Feature: domain Description: DcuC Location: 85396-86728 bp Feature: gene Location: 3350897-3351613 bp Ori: AQV68963.1 Feature: domain Description: rph Location: 3350900-3351608 bp Feature: domain Description: rph Location: 3350900-3351 608 bp Feature: gene Location: 3351679-3352320 bp Ori: AQV68964.1 Feature: domain Description: pyrE Location: 3351682-3352315 bp Feature: domain Description: pyrE Location: 3351 682-335231 5 bp Feature: gene Location: 3352618-3353577 bp Ori: AQV68965.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3352753-3353302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3352753-3353302 bp Feature: gene Location: 3353623-3354219 bp Ori: AQV68966.1 Feature: domain Description: slmA Location: 3353629-3354205 bp Feature: domain Description: slmA Location: 3353629-3354205 bp Feature: gene Location: 3354326-3354784 bp Ori: AQV68967.1 Feature: domain Description: dut Location: 3354332-3354779 bp Feature: domain Description: dut Location: 3354332-3354779 bp Feature: gene Location: 4140679-4141908 bp Ori: AQV69721.1 Feature: domain Description: YesM Location: 4141159-4141900 bp Feature: domain Description: YesM Location: 41 41 1 59-41 41 900 bp Feature: gene Location: 4141981-4142169 bp Feature: gene Location: 4142524-4143045 bp Ori: AQV69723.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4142530-4142812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 42530-41 4281 2 bp Feature: domain Description: GIIM Note: maturase Location: 4142860-4143040 bp Feature: domain Description: GIIM Note: maturase Location: 41 42860-41 43040 bp Feature: gene Location: 4143073-4143612 bp Ori: AQV69724.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4143403-4143481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 43403-41 43481 bp Feature: gene Location: 4143837-4144124 bp Feature: gene Location: 4144098-4145003 bp Feature: gene Location: 4753074-4753787 bp Ori: AQV70284.1 Feature: domain Description: PRK09362 Location: 4753077-4753779 bp Feature: domain Description: PRK09362 Location: 4753077-4753779 bp Feature: gene Location: 4753955-4754527 bp Ori: AQV70285.1 Feature: domain Description: Zn_peptidase Location: 4753958-4754516 bp Feature: domain Description: Zn_peptidase Location: 4753958-475451 6 bp Feature: gene Location: 4755101-4756768 bp Ori: AQV70286.1 Feature: domain Description: RVT_N Location: 4755149-4755386 bp Feature: domain Description: RVT_N Location: 47551 49-4755386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4755437-4756079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4755437-4756079 bp Feature: domain Description: GIIM Note: maturase Location: 4756130-4756364 bp Feature: domain Description: GIIM Note: maturase Location: 47561 30-4756364 bp Feature: domain Description: HNHc Note: nucleases Location: 4756574-4756733 bp Feature: domain Description: HNHc Note: nucleases Location: 4756574-4756733 bp Feature: gene Location: 4756832-4757161 bp Ori: AQV70287.1 Feature: domain Description: YpfJ Location: 4756853-4757156 bp Feature: domain Description: YpfJ Location: 4756853-47571 56 bp Feature: gene Location: 4757176-4759191 bp Ori: AQV70288.1 Feature: domain Description: TmcA Location: 4757182-4759189 bp Feature: domain Description: TmcA Location: 47571 82-47591 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), YesM (COG2972), GIIM (pfam08388)
PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), Zn_peptidase (pfam04228), RVT_N (pfam13655), HNHc (smart00507), YpfJ (COG2321), TmcA (COG1444)

Seq: CP019028.1 Escherichia coli strain Ecol_881 plasmid pEC881_1, complete sequence (147346 bp)
Overview 1 RT 1: 126013-129798 bp Neighborhood of RT #1 [126013, 129798] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 126013-126435 bp Ori: AQV65769.1 Feature: domain Description: DUF1380 Location: 126016-126313 bp Feature: domain Description: DUF1380 Location: 12 6016-12 6313 bp Feature: gene Location: 126432-126623 bp Feature: gene Location: 126937-128604 bp Ori: AQV65771.1 Feature: domain Description: RVT_N Location: 126985-127222 bp Feature: domain Description: RVT_N Location: 12 6985-12 72 2 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127273-127915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 72 73-12 7915 bp Feature: domain Description: GIIM Note: maturase Location: 127966-128200 bp Feature: domain Description: GIIM Note: maturase Location: 12 7966-12 82 00 bp Feature: domain Description: HNHc Note: nucleases Location: 128410-128569 bp Feature: domain Description: HNHc Note: nucleases Location: 12 8410-12 8569 bp Feature: gene Location: 129190-129516 bp Feature: gene Location: 129575-129798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)