myRT

myRT report for GCA_002024245.1_ASM202424v1

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Seq: CP019970.1 Enterococcus faecium isolate 2014-VREF-114 chromosome, complete genome (2804968 bp)
Overview 1 RT 1: 965332-970657 bp 2 RT 2: 2133692-2138746 bp Neighborhood of RT #1 [965332, 970657] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #2 [2133692, 2138746] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 965332-965832 bp Feature: domain Description: ArdA Location: 965350-965821 bp Feature: domain Description: ArdA Location: 965350-965821 bp Feature: gene Location: 965845-965997 bp Feature: gene Location: 966173-968083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966506-967244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966506-967244 bp Feature: domain Description: HNHc Note: nucleases Location: 967799-967964 bp Feature: domain Description: HNHc Note: nucleases Location: 967799-967964 bp Feature: gene Location: 968963-970147 bp Feature: domain Description: HTH_XRE Location: 968993-969137 bp Feature: domain Description: HTH_XRE Location: 968993-9691 37 bp Feature: domain Description: Rol_Rep_N Location: 969170-969434 bp Feature: domain Description: Rol_Rep_N Location: 9691 70-969434 bp Feature: domain Description: Rep_trans Location: 969458-970070 bp Feature: domain Description: Rep_trans Location: 969458-970070 bp Feature: gene Location: 970403-970657 bp Feature: gene Location: 2133692-2134195 bp Feature: domain Description: ArdA Location: 2133710-2134181 bp Feature: domain Description: ArdA Location: 21 3371 0-21 341 81 bp Feature: gene Location: 2134197-2134406 bp Feature: gene Location: 2134536-2136446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2134869-2135607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 34869-21 35607 bp Feature: domain Description: HNHc Note: nucleases Location: 2136162-2136327 bp Feature: domain Description: HNHc Note: nucleases Location: 21 361 62-21 36327 bp Feature: gene Location: 2137326-2138510 bp Feature: domain Description: HTH_XRE Location: 2137356-2137500 bp Feature: domain Description: HTH_XRE Location: 21 37356-21 37500 bp Feature: domain Description: Rol_Rep_N Location: 2137533-2137797 bp Feature: domain Description: Rol_Rep_N Location: 21 37533-21 37797 bp Feature: domain Description: Rep_trans Location: 2137821-2138433 bp Feature: domain Description: Rep_trans Location: 21 37821 -21 38433 bp Feature: gene Location: 2138603-2138746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: CP019972.1 Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence (128951 bp)
Overview 1 RT 1: 28177-33820 bp Neighborhood of RT #1 [28177, 33828] VirB4 RVT-GII HNHc Rve PinE Feature: gene Location: 28177-29802 bp Feature: domain Description: VirB4 Location: 28501-29113 bp Feature: domain Description: VirB4 Location: 2 8501-2 9113 bp Feature: gene Location: 30070-30303 bp Feature: gene Location: 30490-32367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30805-31543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30805-31543 bp Feature: domain Description: HNHc Note: nucleases Location: 32101-32254 bp Feature: domain Description: HNHc Note: nucleases Location: 32 101-32 2 54 bp Feature: gene Location: 32429-33115 bp Feature: domain Description: Rve Location: 32438-33086 bp Feature: domain Description: Rve Location: 32 438-33086 bp Feature: gene Location: 33205-33828 bp Feature: domain Description: PinE Location: 33211-33820 bp Feature: domain Description: PinE Location: 332 11-3382 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Rve (COG3316), PinE (COG1961)

Seq: CP019974.1 Enterococcus faecium isolate 2014-VREF-114 plasmid p114-4 sequence (55063 bp)
Overview 1 RT 1: 20332-25612 bp Neighborhood of RT #1 [20332, 26304] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 20332-21537 bp Feature: domain Description: Glucosaminidase Location: 20608-21004 bp Feature: domain Description: Glucosaminidase Location: 20608-21004 bp Feature: domain Description: Peptidase_M23 Location: 21181-21418 bp Feature: domain Description: Peptidase_M23 Location: 21181-21418 bp Feature: gene Location: 21537-21857 bp Feature: gene Location: 22045-23922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22360-23098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 60-23 098 bp Feature: domain Description: HNHc Note: nucleases Location: 23656-23809 bp Feature: domain Description: HNHc Note: nucleases Location: 23 656-23 809 bp Feature: gene Location: 24109-24342 bp Feature: gene Location: 24610-26304 bp Feature: domain Description: VirB4 Location: 24928-25612 bp Feature: domain Description: VirB4 Location: 24928-25612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)