myRT

myRT report for GCA_002025105.1_ASM202510v1

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Seq: CP020005.1 Bacillus thuringiensis strain L-7601 plasmid unnamed3, complete sequence (408071 bp)
Overview 1 RT 1: 563-4695 bp 2 RT 2: 86895-91254 bp 3 RT 3: 149132-155942 bp 4 RT 4: 185356-190638 bp 5 RT 5: 271725-278512 bp 6 RT 6: 313583-321765 bp 7 RT 7: 401082-407768 bp Neighborhood of RT #1 [563, 4718] RVT-GII HNHc DEXDc Neighborhood of RT #2 [86895, 91254] PRTRC_ThiF RVT-GII Intron_maturas2 HNHc E1_enzyme_family Neighborhood of RT #3 [149132, 155942] RVT-GII HNHc CwlT_like RVT-GII NlpD Spr Neighborhood of RT #4 [185356, 190682] DDE_Tnp_1 RVT-GII GIIM MqsR_toxin CxxCG_CxxCG_HTH GepA Neighborhood of RT #5 [271725, 278517] OafA Lysozyme_like RVT-GII Intron_maturas2 HNHc FtsW Amj Neighborhood of RT #6 [313583, 321929] DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 DDE_Tnp_1 RVT-GII DDE_Tnp_1 COG3547 Transposase_20 Neighborhood of RT #7 [401082, 407821] RVT_N RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 563-2353 bp Ori: AQY42419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1 565 bp Feature: domain Description: HNHc Note: nucleases Location: 2105-2243 bp Feature: domain Description: HNHc Note: nucleases Location: 21 05-2243 bp Feature: gene Location: 2547-2744 bp Feature: gene Location: 3042-4718 bp Ori: AQY42420.1 Feature: domain Description: DEXDc Location: 3819-4695 bp Feature: domain Description: DEXDc Location: 381 9-4695 bp Feature: gene Location: 86895-87335 bp Feature: gene Location: 87355-87897 bp Ori: AQY42497.1 Feature: domain Description: PRTRC_ThiF Location: 87424-87874 bp Feature: domain Description: PRTRC_ThiF Location: 87424-87874 bp Feature: gene Location: 88149-90089 bp Ori: AQY42498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88479-89316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88479-8931 6 bp Feature: domain Description: Intron_maturas2 Location: 89454-89745 bp Feature: domain Description: Intron_maturas2 Location: 89454-89745 bp Feature: domain Description: HNHc Note: nucleases Location: 89877-90036 bp Feature: domain Description: HNHc Note: nucleases Location: 89877-90036 bp Feature: gene Location: 90658-90840 bp Ori: AQY42499.1 Feature: domain Description: E1_enzyme_family Location: 90706-90823 bp Feature: domain Description: E1 _enzyme_family Location: 90706-90823 bp Feature: gene Location: 90853-91254 bp Feature: gene Location: 149132-149320 bp Feature: gene Location: 149471-149701 bp Feature: gene Location: 149864-151660 bp Ori: AQY42554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150122-150827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 501 22-1 50827 bp Feature: domain Description: HNHc Note: nucleases Location: 151388-151523 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 388-1 51 523 bp Feature: gene Location: 151729-151920 bp Ori: AQY42555.1 Feature: domain Description: CwlT_like Location: 151756-151909 bp Feature: domain Description: CwlT_like Location: 1 51 756-1 51 909 bp Feature: gene Location: 152496-154315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152760-153585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52760-1 53585 bp Feature: gene Location: 154475-155350 bp Ori: AQY42723.1 Feature: domain Description: NlpD Location: 154490-154919 bp Feature: domain Description: NlpD Location: 1 54490-1 5491 9 bp Feature: domain Description: Spr Location: 154955-155291 bp Feature: domain Description: Spr Location: 1 54955-1 55291 bp Feature: gene Location: 155367-155942 bp Feature: gene Location: 185356-186404 bp Feature: domain Description: DDE_Tnp_1 Location: 185716-186094 bp Feature: domain Description: DDE_Tnp_1 Location: 1 8571 6-1 86094 bp Feature: gene Location: 186565-186882 bp Feature: gene Location: 186916-188223 bp Ori: AQY42584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187201-187840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 87201 -1 87840 bp Feature: domain Description: GIIM Note: maturase Location: 187915-188140 bp Feature: domain Description: GIIM Note: maturase Location: 1 8791 5-1 881 40 bp Feature: gene Location: 189184-189594 bp Ori: AQY42585.1 Feature: domain Description: MqsR_toxin Location: 189295-189556 bp Feature: domain Description: MqsR_toxin Location: 1 89295-1 89556 bp Feature: gene Location: 189591-190682 bp Ori: AQY42586.1 Feature: domain Description: CxxCG_CxxCG_HTH Location: 189648-189990 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 1 89648-1 89990 bp Feature: domain Description: GepA Location: 190221-190638 bp Feature: domain Description: GepA Location: 1 90221 -1 90638 bp Feature: gene Location: 271725-272882 bp Ori: AQY42645.1 Feature: domain Description: OafA Location: 271770-272874 bp Feature: domain Description: OafA Location: 271 770-272874 bp Feature: gene Location: 273043-273624 bp Ori: AQY42646.1 Feature: domain Description: Lysozyme_like Location: 273178-273613 bp Feature: domain Description: Lysozyme_like Location: 2731 78-27361 3 bp Feature: gene Location: 274200-276020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274464-275295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274464-275295 bp Feature: domain Description: Intron_maturas2 Location: 275367-275712 bp Feature: domain Description: Intron_maturas2 Location: 275367-27571 2 bp Feature: domain Description: HNHc Note: nucleases Location: 275841-275994 bp Feature: domain Description: HNHc Note: nucleases Location: 275841 -275994 bp Feature: gene Location: 276629-277813 bp Ori: AQY42647.1 Feature: domain Description: FtsW Location: 276653-277784 bp Feature: domain Description: FtsW Location: 276653-277784 bp Feature: gene Location: 278182-278517 bp Ori: AQY42648.1 Feature: domain Description: Amj Location: 278227-278512 bp Feature: domain Description: Amj Location: 278227-27851 2 bp Feature: gene Location: 313583-314686 bp Feature: domain Description: DDE_Tnp_1 Location: 314000-314687 bp Feature: domain Description: DDE_Tnp_1 Location: 31 4000-31 4687 bp Feature: gene Location: 314853-315032 bp Feature: gene Location: 315206-316513 bp Ori: AQY42673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315491-316130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 5491 -31 61 30 bp Feature: domain Description: GIIM Note: maturase Location: 316205-316430 bp Feature: domain Description: GIIM Note: maturase Location: 31 6205-31 6430 bp Feature: gene Location: 316657-317043 bp Feature: domain Description: DDE_Tnp_1 Location: 316666-316768 bp Feature: domain Description: DDE_Tnp_1 Location: 31 6666-31 6768 bp Feature: gene Location: 317275-318324 bp Feature: domain Description: DDE_Tnp_1 Location: 317635-318319 bp Feature: domain Description: DDE_Tnp_1 Location: 31 7635-31 831 9 bp Feature: gene Location: 318485-318664 bp Feature: gene Location: 318838-320144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319123-319474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 91 23-31 9474 bp Feature: gene Location: 320288-320659 bp Feature: domain Description: DDE_Tnp_1 Location: 320297-320399 bp Feature: domain Description: DDE_Tnp_1 Location: 320297-320399 bp Feature: gene Location: 320718-321929 bp Feature: domain Description: COG3547 Location: 320793-321225 bp Feature: domain Description: COG3547 Location: 320793-321 225 bp Feature: domain Description: Transposase_20 Location: 321534-321765 bp Feature: domain Description: Transposase_20 Location: 321 534-321 765 bp Feature: gene Location: 401082-401807 bp Feature: gene Location: 401824-402546 bp Feature: gene Location: 402647-404461 bp Ori: AQY42716.1 Feature: domain Description: RVT_N Location: 402701-402947 bp Feature: domain Description: RVT_N Location: 402701 -402947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403001-403655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403001 -403655 bp Feature: domain Description: GIIM Note: maturase Location: 403721-403952 bp Feature: domain Description: GIIM Note: maturase Location: 403721 -403952 bp Feature: domain Description: HNHc Note: nucleases Location: 404159-404324 bp Feature: domain Description: HNHc Note: nucleases Location: 4041 59-404324 bp Feature: gene Location: 405035-405985 bp Feature: gene Location: 405986-407821 bp Ori: AQY42717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406253-407084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406253-407084 bp Feature: domain Description: Intron_maturas2 Location: 407153-407528 bp Feature: domain Description: Intron_maturas2 Location: 4071 53-407528 bp Feature: domain Description: HNHc Note: nucleases Location: 407621-407768 bp Feature: domain Description: HNHc Note: nucleases Location: 407621 -407768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DEXDc (smart00487), PRTRC_ThiF (TIGR03736), Intron_maturas2 (pfam01348), E1_enzyme_family (cl22428), CwlT_like, NlpD (COG0739), Spr (COG0791), DDE_Tnp_1 (pfam01609)
GIIM (pfam08388), MqsR_toxin (pfam15723), CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600), OafA (COG1835), Lysozyme_like (pfam13702), FtsW (COG0772), Amj (pfam10997), COG3547 (Transposase ), Transposase_20 (pfam02371)
RVT_N (pfam13655)

Seq: CP020002.1 Bacillus thuringiensis strain L-7601, complete genome (5790408 bp)
Overview 1 RT 1: 202619-206898 bp 2 RT 2: 2001398-2006153 bp 3 RT 3: 2159786-2163548 bp 4 RT 4: 2622083-2627340 bp 5 RT 5: 4234653-4238952 bp 6 RT 6: 4728290-4733056 bp Neighborhood of RT #1 [202619, 206912] bPH_3 YitT_membrane RVT-GII Intron_maturas2 HNHc YitT_C YxeA Neighborhood of RT #2 [2001398, 2006155] DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 Collagen KOG3544 Neighborhood of RT #3 [2159786, 2163643] DUF3933 RssA RVT-GII HNHc Pat_ExoU_VipD_like Neighborhood of RT #4 [2622083, 2627340] Lysozyme_like RVT-GII Intron_maturas2 HNHc RimL Neighborhood of RT #5 [4234653, 4239005] ComJ RVT-GII Intron_maturas2 HNHc HTH_MlrA-like_sg1 DUF3967 Neighborhood of RT #6 [4728290, 4733070] EmrE PRK05420 RVT-GII Intron_maturas2 HNHc PRK05420 IscR Feature: gene Location: 202619-202948 bp Ori: AQY36745.1 Feature: domain Description: bPH_3 Location: 202658-202931 bp Feature: domain Description: bPH_3 Location: 2 02 658-2 02 931 bp Feature: gene Location: 203067-203585 bp Feature: domain Description: YitT_membrane Location: 203094-203586 bp Feature: domain Description: YitT_membrane Location: 2 03094-2 03586 bp Feature: gene Location: 204182-205996 bp Ori: AQY36746.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204446-205277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 04446-2 052 77 bp Feature: domain Description: Intron_maturas2 Location: 205358-205646 bp Feature: domain Description: Intron_maturas2 Location: 2 05358-2 05646 bp Feature: domain Description: HNHc Note: nucleases Location: 205826-205967 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0582 6-2 05967 bp Feature: gene Location: 206097-206417 bp Feature: domain Description: YitT_C Location: 206154-206406 bp Feature: domain Description: YitT_C Location: 2 06154-2 06406 bp Feature: gene Location: 206556-206912 bp Ori: AQY36747.1 Feature: domain Description: YxeA Location: 206565-206898 bp Feature: domain Description: YxeA Location: 2 06565-2 06898 bp Feature: gene Location: 2001398-2002447 bp Feature: domain Description: DDE_Tnp_1 Location: 2001758-2002442 bp Feature: domain Description: DDE_Tnp_1 Location: 2 001758-2 002 442 bp Feature: gene Location: 2002608-2002787 bp Feature: gene Location: 2002961-2004268 bp Ori: AQY38410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003246-2003885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0032 46-2 003885 bp Feature: domain Description: GIIM Note: maturase Location: 2003960-2004185 bp Feature: domain Description: GIIM Note: maturase Location: 2 003960-2 004185 bp Feature: gene Location: 2004412-2004798 bp Feature: domain Description: DDE_Tnp_1 Location: 2004421-2004523 bp Feature: domain Description: DDE_Tnp_1 Location: 2 00442 1-2 00452 3 bp Feature: gene Location: 2005514-2006155 bp Feature: domain Description: Collagen Location: 2005517-2005685 bp Feature: domain Description: Collagen Location: 2 005517-2 005685 bp Feature: domain Description: KOG3544 Location: 2005868-2006153 bp Feature: domain Description: KOG3544 Location: 2 005868-2 006153 bp Feature: gene Location: 2159786-2159953 bp Ori: AQY38558.1 Feature: domain Description: DUF3933 Location: 2159789-2159942 bp Feature: domain Description: DUF3933 Location: 2 159789-2 159942 bp Feature: gene Location: 2160067-2160768 bp Feature: domain Description: RssA Location: 2160076-2160673 bp Feature: domain Description: RssA Location: 2 160076-2 160673 bp Feature: gene Location: 2160873-2162663 bp Ori: AQY38559.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2161173-2161875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 161173-2 161875 bp Feature: domain Description: HNHc Note: nucleases Location: 2162415-2162553 bp Feature: domain Description: HNHc Note: nucleases Location: 2 162 415-2 162 553 bp Feature: gene Location: 2162857-2163054 bp Feature: gene Location: 2163335-2163643 bp Ori: AQY38560.1 Feature: domain Description: Pat_ExoU_VipD_like Location: 2163353-2163548 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 2 163353-2 163548 bp Feature: gene Location: 2622083-2622277 bp Feature: gene Location: 2622498-2623079 bp Ori: AQY38978.1 Feature: domain Description: Lysozyme_like Location: 2622633-2623068 bp Feature: domain Description: Lysozyme_like Location: 2 62 2 633-2 62 3068 bp Feature: gene Location: 2623655-2625478 bp Ori: AQY38979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623919-2624753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 3919-2 62 4753 bp Feature: domain Description: Intron_maturas2 Location: 2624825-2625170 bp Feature: domain Description: Intron_maturas2 Location: 2 62 482 5-2 62 5170 bp Feature: domain Description: HNHc Note: nucleases Location: 2625299-2625452 bp Feature: domain Description: HNHc Note: nucleases Location: 2 62 52 99-2 62 5452 bp Feature: gene Location: 2625980-2626486 bp Ori: AQY38980.1 Feature: domain Description: RimL Location: 2625989-2626484 bp Feature: domain Description: RimL Location: 2 62 5989-2 62 6484 bp Feature: gene Location: 2626951-2627340 bp Feature: gene Location: 4234653-4235042 bp Ori: AQY40471.1 Feature: domain Description: ComJ Location: 4234659-4235031 bp Feature: domain Description: ComJ Location: 42 34659-42 35031 bp Feature: gene Location: 4235079-4235243 bp Feature: gene Location: 4235311-4237125 bp Ori: AQY40473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4235575-4236406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 35575-42 36406 bp Feature: domain Description: Intron_maturas2 Location: 4236487-4236775 bp Feature: domain Description: Intron_maturas2 Location: 42 36487-42 36775 bp Feature: domain Description: HNHc Note: nucleases Location: 4236955-4237096 bp Feature: domain Description: HNHc Note: nucleases Location: 42 36955-42 37096 bp Feature: gene Location: 4237681-4238027 bp Feature: gene Location: 4238256-4239005 bp Ori: AQY40474.1 Feature: domain Description: HTH_MlrA-like_sg1 Location: 4238271-4238427 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 42 382 71-42 3842 7 bp Feature: domain Description: DUF3967 Location: 4238859-4238952 bp Feature: domain Description: DUF3967 Location: 42 38859-42 38952 bp Feature: gene Location: 4728290-4729255 bp Ori: AQY40999.1 Feature: domain Description: EmrE Location: 4728404-4729202 bp Feature: domain Description: EmrE Location: 472 8404-472 92 02 bp Feature: gene Location: 4729399-4729638 bp Feature: domain Description: PRK05420 Location: 4729402-4729636 bp Feature: domain Description: PRK0542 0 Location: 472 9402 -472 9636 bp Feature: gene Location: 4730235-4732049 bp Ori: AQY41000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4730499-4731330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4730499-4731330 bp Feature: domain Description: Intron_maturas2 Location: 4731411-4731699 bp Feature: domain Description: Intron_maturas2 Location: 4731411-4731699 bp Feature: domain Description: HNHc Note: nucleases Location: 4731879-4732020 bp Feature: domain Description: HNHc Note: nucleases Location: 4731879-4732 02 0 bp Feature: gene Location: 4732153-4732578 bp Feature: domain Description: PRK05420 Location: 4732159-4732570 bp Feature: domain Description: PRK0542 0 Location: 4732 159-4732 570 bp Feature: gene Location: 4732639-4733070 bp Ori: AQY41001.1 Feature: domain Description: IscR Location: 4732642-4733056 bp Feature: domain Description: IscR Location: 4732 642 -4733056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bPH_3 (pfam14470), YitT_membrane (pfam02588), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YitT_C (cd16380), YxeA (COG5294), DDE_Tnp_1 (pfam01609), GIIM (pfam08388), Collagen (pfam01391)
KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), DUF3933 (pfam13069), RssA (COG1752), Pat_ExoU_VipD_like (cd07207), Lysozyme_like (pfam13702), RimL (COG1670), ComJ (pfam11033), HTH_MlrA-like_sg1 (cd04764), DUF3967 (pfam13152), EmrE (pfam13536)
PRK05420 (aquaporin Z; Provisional), IscR (TIGR02010)