myRT

myRT report for GCA_002055855.1_ASM205585v1

Download annotations/find similar RTs

Seq: CP020068.1 Klebsiella pneumoniae strain AR_0068 plasmid unitig_1, complete sequence (276460 bp)
Overview 1 RT 1: 8666-12526 bp Neighborhood of RT #1 [8666, 12526] HHA RVT-GII INT_Cre_C Feature: gene Location: 8666-8920 bp Ori: ARA49904.1 Feature: domain Description: HHA Location: 8717-8900 bp Feature: domain Description: HHA Location: 871 7-8900 bp Feature: gene Location: 9186-9437 bp Feature: gene Location: 9437-10921 bp Ori: ARA49906.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9839-10529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9839-1 0529 bp Feature: gene Location: 11007-12143 bp Ori: ARA49907.1 Feature: domain Description: INT_Cre_C Location: 11430-12084 bp Feature: domain Description: INT_Cre_C Location: 1 1 430-1 2084 bp Feature: gene Location: 12209-12526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP020069.1 Klebsiella pneumoniae strain AR_0068 plasmid unitig_2, complete sequence (213013 bp)
Overview 1 RT 1: 51514-55237 bp Neighborhood of RT #1 [51514, 55239] PRK10276 RVT-GII Antirestrict Feature: gene Location: 51514-51939 bp Ori: ARA50240.1 Feature: domain Description: PRK10276 Location: 51517-51925 bp Feature: domain Description: PRK102 76 Location: 51517-5192 5 bp Feature: gene Location: 52094-52345 bp Feature: gene Location: 52345-53829 bp Ori: ARA50242.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52747-53437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 747-53437 bp Feature: gene Location: 54063-54293 bp Feature: gene Location: 54814-55239 bp Ori: ARA50244.1 Feature: domain Description: Antirestrict Location: 54949-55237 bp Feature: domain Description: Antirestrict Location: 54949-552 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: CP020067.1 Klebsiella pneumoniae strain AR_0068, complete genome (5357430 bp)
Overview 1 RT 1: 248172-252271 bp 2 RT 2: 3132465-3139813 bp 3 RT 3: 4193167-4198039 bp 4 RT 4: 4323710-4326545 bp Neighborhood of RT #1 [248172, 252282] umuC PRK10276 RVT-GII DinI Neighborhood of RT #2 [3132465, 3139863] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #3 [4193167, 4198053] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [4323710, 4326545] RVT-GII Feature: gene Location: 248172-249437 bp Ori: ARA44881.1 Feature: domain Description: umuC Location: 248175-249435 bp Feature: domain Description: umuC Location: 248175-24943 5 bp Feature: gene Location: 249440-249859 bp Ori: ARA44882.1 Feature: domain Description: PRK10276 Location: 249443-249854 bp Feature: domain Description: PRK10276 Location: 249443 -249854 bp Feature: gene Location: 249938-251422 bp Ori: ARA44883.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250340-251030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2503 40-25103 0 bp Feature: gene Location: 251422-251673 bp Feature: gene Location: 252040-252282 bp Ori: ARA44885.1 Feature: domain Description: DinI Location: 252091-252271 bp Feature: domain Description: DinI Location: 252091-252271 bp Feature: gene Location: 3132465-3133229 bp Ori: ARA47532.1 Feature: domain Description: FimC Location: 3132510-3133212 bp Feature: domain Description: FimC Location: 3 13 2510-3 13 3 212 bp Feature: gene Location: 3133276-3135870 bp Ori: ARA47533.1 Feature: domain Description: FimD Location: 3133318-3135859 bp Feature: domain Description: FimD Location: 3 13 3 3 18-3 13 5859 bp Feature: gene Location: 3135867-3137948 bp Ori: ARA47534.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3136278-3136722 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 13 6278-3 13 6722 bp Feature: gene Location: 3137990-3138445 bp Ori: ARA47535.1 Feature: domain Description: Integrase_1 Location: 3137993-3138227 bp Feature: domain Description: Integrase_1 Location: 3 13 7993 -3 13 8227 bp Feature: gene Location: 3138625-3139863 bp Feature: domain Description: PRK09692 Location: 3138631-3139813 bp Feature: domain Description: PRK09692 Location: 3 13 863 1-3 13 9813 bp Feature: gene Location: 4193167-4194336 bp Ori: ARA48521.1 Feature: domain Description: dacD Location: 4193176-4194331 bp Feature: domain Description: dacD Location: 4193 176-41943 3 1 bp Feature: gene Location: 4194606-4194857 bp Feature: gene Location: 4194857-4196341 bp Ori: ARA48523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4195259-4195949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4195259-4195949 bp Feature: gene Location: 4196423-4196896 bp Ori: ARA48524.1 Feature: domain Description: PRK10016 Location: 4196426-4196885 bp Feature: domain Description: PRK10016 Location: 4196426-4196885 bp Feature: gene Location: 4196995-4198053 bp Ori: ARA48525.1 Feature: domain Description: YccC Location: 4197001-4198039 bp Feature: domain Description: YccC Location: 4197001-419803 9 bp Feature: gene Location: 4323710-4324039 bp Feature: gene Location: 4324493-4324744 bp Feature: gene Location: 4324744-4326228 bp Ori: ARA48663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4325146-4325836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 25146-43 2583 6 bp Feature: gene Location: 4326221-4326292 bp Feature: gene Location: 4326306-4326545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional), dacD (PRK11397)
PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: CP020070.1 Klebsiella pneumoniae strain AR_0068 plasmid unitig_4, complete sequence (37875 bp)
Overview 1 RT 1: 4927-8277 bp Neighborhood of RT #1 [4927, 8277] ArdC RVT-GII Feature: gene Location: 4927-5892 bp Ori: ARA50414.1 Feature: domain Description: ArdC Location: 5053-5887 bp Feature: domain Description: ArdC Location: 5053-5887 bp Feature: gene Location: 6301-6369 bp Feature: gene Location: 6362-7846 bp Ori: ARA50415.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6764-7454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6764 -74 54 bp Feature: gene Location: 7846-8097 bp Feature: gene Location: 8162-8277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII