myRT

myRT report for GCA_002058765.1_ASM205876v1

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Seq: CP019944.1 Escherichia coli strain DSM 103246 chromosome, complete genome (5445834 bp)
Overview 1 RT 1: 860131-865373 bp 2 RT 2: 2641079-2648871 bp 3 RT 3: 4183668-4189510 bp Neighborhood of RT #1 [860131, 865375] COG3547 PHA02517 RVT-GII GIIM PHA02517 LomR Neighborhood of RT #2 [2641079, 2649305] PRK01271 YhhI YhhI YhhI RVT-GII PAAR_2 RhsA RHS_repeat RHS_repeat RHS_repeat RHS_repeat RhsA Neighborhood of RT #3 [4183668, 4189545] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 860131-861207 bp Ori: AQZ75881.1 Feature: domain Description: COG3547 Location: 860170-861091 bp Feature: domain Description: COG3547 Location: 8601 70-861 091 bp Feature: gene Location: 861426-861620 bp Ori: AQZ75882.1 Feature: domain Description: PHA02517 Location: 861429-861576 bp Feature: domain Description: PHA0251 7 Location: 861 429-861 576 bp Feature: gene Location: 861749-863272 bp Ori: AQZ75883.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862022-862754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862022-862754 bp Feature: domain Description: GIIM Note: maturase Location: 862829-863027 bp Feature: domain Description: GIIM Note: maturase Location: 862829-863027 bp Feature: gene Location: 863864-864298 bp Ori: AQZ75884.1 Gene: insF_1 Feature: domain Description: PHA02517 Location: 863912-864233 bp Feature: domain Description: PHA0251 7 Location: 86391 2-864233 bp Feature: gene Location: 864638-865375 bp Ori: AQZ75885.1 Gene: tia_1 Feature: domain Description: LomR Location: 864641-865373 bp Feature: domain Description: LomR Location: 864641 -865373 bp Feature: gene Location: 2641079-2641306 bp Ori: AQZ77578.1 Feature: domain Description: PRK01271 Location: 2641082-2641304 bp Feature: domain Description: PRK01 271 Location: 2641 082-2641 304 bp Feature: gene Location: 2641405-2642523 bp Ori: AQZ77579.1 Gene: yhhI_1 Feature: domain Description: YhhI Location: 2641408-2641753 bp Feature: domain Description: YhhI Location: 2641 408-2641 753 bp Feature: domain Description: YhhI Location: 2641810-2642164 bp Feature: domain Description: YhhI Location: 2641 81 0-26421 64 bp Feature: domain Description: YhhI Location: 2642182-2642425 bp Feature: domain Description: YhhI Location: 26421 82-2642425 bp Feature: gene Location: 2643163-2644047 bp Ori: AQZ77580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643439-2644030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643439-2644030 bp Feature: gene Location: 2644686-2645084 bp Feature: gene Location: 2645085-2649305 bp Ori: AQZ77582.1 Feature: domain Description: PAAR_2 Location: 2645091-2645172 bp Feature: domain Description: PAAR_2 Location: 2645091 -26451 72 bp Feature: domain Description: RhsA Location: 2645670-2646117 bp Feature: domain Description: RhsA Location: 2645670-26461 1 7 bp Feature: domain Description: RHS_repeat Location: 2646180-2646270 bp Feature: domain Description: RHS_repeat Location: 26461 80-2646270 bp Feature: domain Description: RHS_repeat Location: 2646324-2646417 bp Feature: domain Description: RHS_repeat Location: 2646324-264641 7 bp Feature: domain Description: RHS_repeat Location: 2646450-2646543 bp Feature: domain Description: RHS_repeat Location: 2646450-2646543 bp Feature: domain Description: RHS_repeat Location: 2646564-2646681 bp Feature: domain Description: RHS_repeat Location: 2646564-2646681 bp Feature: domain Description: RhsA Location: 2646702-2648871 bp Feature: domain Description: RhsA Location: 2646702-2648871 bp Feature: gene Location: 4183668-4183946 bp Ori: AQZ78975.1 Feature: domain Description: DUF5339 Location: 4183731-4183932 bp Feature: domain Description: DUF5339 Location: 41 83731 -41 83932 bp Feature: gene Location: 4184284-4185315 bp Ori: AQZ78976.1 Feature: domain Description: Asparaginase_2 Location: 4184374-4185307 bp Feature: domain Description: Asparaginase_2 Location: 41 84374-41 85307 bp Feature: gene Location: 4185839-4186285 bp Ori: AQZ78977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4186145-4186247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 861 45-41 86247 bp Feature: gene Location: 4186931-4188292 bp Ori: AQZ78978.1 Feature: domain Description: DcuC Location: 4186934-4188266 bp Feature: domain Description: DcuC Location: 41 86934-41 88266 bp Feature: gene Location: 4188289-4189545 bp Ori: AQZ78979.1 Feature: domain Description: PRK13381 Location: 4188295-4189510 bp Feature: domain Description: PRK1 3381 Location: 41 88295-41 8951 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LomR (COG3637), PRK01271 (tautomerase PptA), YhhI (COG5433), PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593)
DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)