myRT

myRT report for GCA_002073455.2_ASM207345v2

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Seq: CP020412.2 Legionella longbeachae strain FDAARGOS_201 chromosome, complete genome (4162732 bp)
Overview 1 RT 1: 25647-29501 bp 2 RT 2: 966338-969315 bp 3 RT 3: 1846570-1850841 bp 4 RT 4: 2545865-2553987 bp 5 RT 5: 2661167-2668082 bp Neighborhood of RT #1 [25647, 29501] RND_mfp HlyD_3 PRK11556 RVT-UG18 Neighborhood of RT #2 [966338, 969315] RimL RVT-UG18 Neighborhood of RT #3 [1846570, 1851026] RVT-AbiP2 Phage_int_SAM_2 Phage_int_SAM_2 Integrase_1 Neighborhood of RT #4 [2545865, 2554007] DEAH_box_HrpB PRK11768 RVT_N RVT-GII COG3666 DDE_Tnp_1_3 DDE_Tnp_1_6 YciA Neighborhood of RT #5 [2661167, 2668111] CAP_ED CPBP RVT-UNC PRK10060 Feature: gene Location: 25647-26849 bp Feature: domain Description: RND_mfp Location: 25755-26256 bp Feature: domain Description: RND_mfp Location: 25755-26256 bp Feature: domain Description: HlyD_3 Location: 26271-26559 bp Feature: domain Description: HlyD_3 Location: 26271 -26559 bp Feature: domain Description: PRK11556 Location: 26610-26802 bp Feature: domain Description: PRK1 1 556 Location: 2661 0-26802 bp Feature: gene Location: 27023-27211 bp Feature: gene Location: 27711-28172 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 27933-28149 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 27933-281 49 bp Feature: gene Location: 28270-28467 bp Feature: gene Location: 28521-29501 bp Feature: gene Location: 966338-966562 bp Feature: domain Description: RimL Location: 966359-966473 bp Feature: domain Description: RimL Location: 966359-966473 bp Feature: gene Location: 966667-967656 bp Feature: gene Location: 968005-968466 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 968227-968443 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 968227-968443 bp Feature: gene Location: 968704-968979 bp Feature: gene Location: 968980-969315 bp Feature: gene Location: 1846570-1846839 bp Feature: gene Location: 1846817-1847074 bp Feature: gene Location: 1847192-1848727 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1847639-1848113 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 847639-1 8481 1 3 bp Feature: gene Location: 1849331-1850140 bp Feature: domain Description: Phage_int_SAM_2 Location: 1849376-1849604 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 849376-1 849604 bp Feature: gene Location: 1850184-1851026 bp Feature: domain Description: Phage_int_SAM_2 Location: 1850193-1850415 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 8501 93-1 85041 5 bp Feature: domain Description: Integrase_1 Location: 1850460-1850841 bp Feature: domain Description: Integrase_1 Location: 1 850460-1 850841 bp Feature: gene Location: 2545865-2548465 bp Feature: domain Description: DEAH_box_HrpB Location: 2545919-2548451 bp Feature: domain Description: DEAH_box_HrpB Location: 254591 9-2548451 bp Feature: gene Location: 2548727-2549707 bp Feature: domain Description: PRK11768 Location: 2548739-2549696 bp Feature: domain Description: PRK1 1 768 Location: 2548739-2549696 bp Feature: gene Location: 2550622-2551482 bp Feature: domain Description: RVT_N Location: 2550673-2550916 bp Feature: domain Description: RVT_N Location: 2550673-255091 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550961-2551465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550961 -2551 465 bp Feature: gene Location: 2552176-2553540 bp Feature: domain Description: COG3666 Location: 2552209-2552650 bp Feature: domain Description: COG3666 Location: 2552209-2552650 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2552797-2553001 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 2552797-2553001 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2553133-2553457 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 25531 33-2553457 bp Feature: gene Location: 2553618-2554007 bp Feature: domain Description: YciA Location: 2553633-2553987 bp Feature: domain Description: YciA Location: 2553633-2553987 bp Feature: gene Location: 2661167-2663227 bp Feature: gene Location: 2663240-2664352 bp Feature: domain Description: CAP_ED Location: 2663279-2663579 bp Feature: domain Description: CAP_ED Location: 2663279-2663579 bp Feature: domain Description: CPBP Location: 2664059-2664305 bp Feature: domain Description: CPBP Location: 2664059-2664305 bp Feature: gene Location: 2664327-2665799 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2664651-2665287 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2664651 -2665287 bp Feature: gene Location: 2665963-2666439 bp Feature: gene Location: 2666465-2668111 bp Feature: domain Description: PRK10060 Location: 2666789-2668082 bp Feature: domain Description: PRK1 0060 Location: 2666789-2668082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RND_mfp (TIGR01730), HlyD_3 (pfam13437), PRK11556 (MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit), RVT-UG18, RimL (COG1670), RVT-AbiP2, Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), DEAH_box_HrpB (TIGR01970), PRK11768 (serine/threonine protein kinase)
RVT_N (pfam13655), RVT-GII, COG3666 (Transposase ), DDE_Tnp_1_3 (pfam13612), DDE_Tnp_1_6 (pfam13751), YciA (COG1607), CAP_ED (cl00047), CPBP, RVT-DGRs/RVT-UG26/RVT-CRISPR/RVT-UG27(RVT-UNC), PRK10060 (cyclic di-GMP phosphodiesterase)