myRT

myRT report for GCA_002075285.3_ASM207528v3

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Seq: CP021983.2 Halomicronema hongdechloris C2206 genome (5577845 bp)
Overview 1 RT 1: 499194-502782 bp 2 RT 2: 873747-877717 bp 3 RT 3: 3263410-3271433 bp 4 RT 4: 3409633-3414611 bp 5 RT 5: 4550380-4554581 bp Neighborhood of RT #1 [499194, 503555] 23S_rRNA_IVP Cas2_I_II_III RVT-CRISPR Cas1_I-II-III HTH_XRE AAA_22 Neighborhood of RT #2 [873747, 877791] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM gag-asp_proteas Neighborhood of RT #3 [3263410, 3273301] LivG LivF RVT-GII GIIM COG3464 DDE_Tnp_ISL3 RVT-GII pPIWI_RE_X RNaseH_pPIWI_RE SF2-N Neighborhood of RT #4 [3409633, 3414646] DDE_3 COG3415 RVT-UG16 prfC Neighborhood of RT #5 [4550380, 4554592] TPR TPR RVT_N RVT-GII GIIM McrA COG2929 Feature: gene Location: 499194-499613 bp Ori: ASC69567.1 Feature: domain Description: 23S_rRNA_IVP Location: 499221-499527 bp Feature: domain Description: 23S_rRNA_IVP Location: 499221 -499527 bp Feature: gene Location: 499628-499906 bp Ori: ASC69568.1 Gene: cas2-3_1 Feature: domain Description: Cas2_I_II_III Location: 499637-499865 bp Feature: domain Description: Cas2_I_II_III Location: 499637-499865 bp Feature: gene Location: 499906-501870 bp Ori: ASC69569.1 Gene: cas1_1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 500098-500704 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 500098-500704 bp Feature: domain Description: Cas1_I-II-III Location: 500878-501832 bp Feature: domain Description: Cas1 _I-II-III Location: 500878-501 832 bp Feature: gene Location: 501900-502121 bp Feature: gene Location: 502146-503555 bp Ori: ASC69571.1 Feature: domain Description: HTH_XRE Location: 502221-502353 bp Feature: domain Description: HTH_XRE Location: 502221 -502353 bp Feature: domain Description: AAA_22 Location: 502482-502782 bp Feature: domain Description: AAA_22 Location: 502482-502782 bp Feature: gene Location: 873747-874376 bp Ori: ASC69924.1 Feature: domain Description: zf-IS66 Location: 874089-874227 bp Feature: domain Description: zf-IS66 Location: 874089-874227 bp Feature: gene Location: 874349-875281 bp Ori: ASC69925.1 Feature: domain Description: DDE_Tnp_IS66 Location: 874355-875114 bp Feature: domain Description: DDE_Tnp_IS66 Location: 874355-8751 1 4 bp Feature: gene Location: 875933-877270 bp Ori: ASC69926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876212-876833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87621 2-876833 bp Feature: domain Description: GIIM Note: maturase Location: 876878-877082 bp Feature: domain Description: GIIM Note: maturase Location: 876878-877082 bp Feature: gene Location: 877297-877470 bp Feature: gene Location: 877384-877791 bp Ori: ASC69928.1 Feature: domain Description: gag-asp_proteas Location: 877471-877717 bp Feature: domain Description: gag-asp_proteas Location: 877471 -87771 7 bp Feature: gene Location: 3263410-3264171 bp Ori: ASC72138.1 Feature: domain Description: LivG Location: 3263413-3264142 bp Feature: domain Description: LivG Location: 326341 3-32641 42 bp Feature: gene Location: 3264168-3264869 bp Ori: ASC72139.1 Feature: domain Description: LivF Location: 3264177-3264864 bp Feature: domain Description: LivF Location: 32641 77-3264864 bp Feature: gene Location: 3265045-3265908 bp Ori: ASC72140.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3265063-3265522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3265063-3265522 bp Feature: domain Description: GIIM Note: maturase Location: 3265597-3265816 bp Feature: domain Description: GIIM Note: maturase Location: 3265597-326581 6 bp Feature: gene Location: 3266025-3266462 bp Ori: ASC72141.1 Feature: domain Description: COG3464 Location: 3266046-3266445 bp Feature: domain Description: COG3464 Location: 3266046-3266445 bp Feature: gene Location: 3266459-3267184 bp Ori: ASC72142.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 3266480-3267170 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3266480-32671 70 bp Feature: gene Location: 3267205-3267639 bp Ori: ASC72143.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267493-3267589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267493-3267589 bp Feature: gene Location: 3268260-3270650 bp Ori: ASC72144.1 Feature: domain Description: pPIWI_RE_X Location: 3268293-3269361 bp Feature: domain Description: pPIWI_RE_X Location: 3268293-3269361 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 3269937-3270633 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 3269937-3270633 bp Feature: gene Location: 3270653-3273301 bp Ori: ASC72145.1 Gene: rgy Feature: domain Description: SF2-N Location: 3270854-3271433 bp Feature: domain Description: SF2-N Location: 3270854-3271 433 bp Feature: gene Location: 3409633-3410094 bp Ori: ASC72278.1 Feature: domain Description: DDE_3 Location: 3409651-3409990 bp Feature: domain Description: DDE_3 Location: 3409651 -3409990 bp Feature: gene Location: 3410166-3410750 bp Ori: ASC72279.1 Feature: domain Description: COG3415 Location: 3410295-3410697 bp Feature: domain Description: COG341 5 Location: 341 0295-341 0697 bp Feature: gene Location: 3410953-3411654 bp Ori: ASC72280.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 3411322-3411631 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 341 1 322-341 1 631 bp Feature: gene Location: 3412096-3412854 bp Feature: gene Location: 3413006-3414646 bp Ori: ASC72282.1 Gene: prfC Feature: domain Description: prfC Location: 3413048-3414611 bp Feature: domain Description: prfC Location: 341 3048-341 461 1 bp Feature: gene Location: 4550380-4551243 bp Ori: ASC73358.1 Feature: domain Description: TPR Location: 4550548-4550779 bp Feature: domain Description: TPR Location: 4550548-4550779 bp Feature: domain Description: TPR Location: 4550944-4551139 bp Feature: domain Description: TPR Location: 4550944-4551 1 39 bp Feature: gene Location: 4551488-4551583 bp Feature: gene Location: 4551636-4553324 bp Ori: ASC73360.1 Feature: domain Description: RVT_N Location: 4551657-4551903 bp Feature: domain Description: RVT_N Location: 4551 657-4551 903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4551945-4552620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4551 945-4552620 bp Feature: domain Description: GIIM Note: maturase Location: 4552719-4552953 bp Feature: domain Description: GIIM Note: maturase Location: 455271 9-4552953 bp Feature: domain Description: McrA Location: 4552998-4553307 bp Feature: domain Description: McrA Location: 4552998-4553307 bp Feature: gene Location: 4554021-4554305 bp Feature: gene Location: 4554332-4554592 bp Ori: ASC73362.1 Feature: domain Description: COG2929 Location: 4554362-4554581 bp Feature: domain Description: COG2929 Location: 4554362-4554581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 23S_rRNA_IVP (pfam05635), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), HTH_XRE (smart00530), AAA_22 (pfam13401), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)
gag-asp_proteas (pfam13975), LivG (COG0411), LivF (COG0410), COG3464 (Transposase ), DDE_Tnp_ISL3 (pfam01610), pPIWI_RE_X, RNaseH_pPIWI_RE, SF2-N (cd00046), DDE_3 (pfam13358), COG3415 (Transposase )
RVT-UG16, prfC (TIGR00503), TPR (smart00028), RVT_N (pfam13655), McrA (COG4058), COG2929 (Uncharacterized conserved protein, DUF497 family )