myRT

myRT report for GCA_002077195.1_ASM207719v1

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Seq: CP017220.1 Escherichia coli strain FAM21845 chromosome, complete genome (4901993 bp)
Overview 1 RT 1: 337793-341774 bp 2 RT 2: 376428-379000 bp 3 RT 3: 2932509-2937773 bp 4 RT 4: 3310391-3314048 bp Neighborhood of RT #1 [337793, 342115] IS285 PHA02517 RVT-GII GIIM PinE Collar Neighborhood of RT #2 [376428, 379065] DUF1018 Mor RVT-GII PHA02517 Neighborhood of RT #3 [2932509, 2937775] PHA02517 RVT-GII GIIM PHA02517 PRK08026 Neighborhood of RT #4 [3310391, 3314059] PHA02517 RVT-GII GIIM PHA02517 TIGR00156 Feature: gene Location: 337793-338983 bp Ori: ARD50102.1 Feature: domain Description: IS285 Location: 337823-338981 bp Feature: domain Description: IS285 Location: 337823-338981 bp Feature: gene Location: 338989-339478 bp Feature: domain Description: PHA02517 Location: 338992-339454 bp Feature: domain Description: PHA0251 7 Location: 338992-339454 bp Feature: gene Location: 339559-340461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339577-339943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339577-339943 bp Feature: domain Description: GIIM Note: maturase Location: 340018-340216 bp Feature: domain Description: GIIM Note: maturase Location: 34001 8-34021 6 bp Feature: gene Location: 340520-341092 bp Ori: ARD50103.1 Feature: domain Description: PinE Location: 340523-341054 bp Feature: domain Description: PinE Location: 340523-341 054 bp Feature: gene Location: 341603-342115 bp Feature: domain Description: Collar Location: 341633-341774 bp Feature: domain Description: Collar Location: 341 633-341 774 bp Feature: gene Location: 376428-376880 bp Ori: ARD50148.1 Feature: domain Description: DUF1018 Location: 376488-376836 bp Feature: domain Description: DUF1 01 8 Location: 376488-376836 bp Feature: gene Location: 376852-377241 bp Ori: ARD50149.1 Feature: domain Description: Mor Location: 376879-377200 bp Feature: domain Description: Mor Location: 376879-377200 bp Feature: gene Location: 377401-378033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377659-378034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377659-378034 bp Feature: gene Location: 378002-378427 bp Feature: gene Location: 378640-379065 bp Ori: ARD50150.1 Feature: domain Description: PHA02517 Location: 378664-379000 bp Feature: domain Description: PHA0251 7 Location: 378664-379000 bp Feature: gene Location: 2932509-2932700 bp Feature: gene Location: 2932683-2933108 bp Ori: ARD52455.1 Feature: domain Description: PHA02517 Location: 2932707-2933043 bp Feature: domain Description: PHA0251 7 Location: 2932707-2933043 bp Feature: gene Location: 2933715-2935223 bp Ori: ARD54385.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2933973-2934705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2933973-2934705 bp Feature: domain Description: GIIM Note: maturase Location: 2934780-2934978 bp Feature: domain Description: GIIM Note: maturase Location: 2934780-2934978 bp Feature: gene Location: 2935304-2935792 bp Feature: domain Description: PHA02517 Location: 2935307-2935781 bp Feature: domain Description: PHA0251 7 Location: 2935307-2935781 bp Feature: gene Location: 2935907-2937775 bp Ori: ARD52456.1 Feature: domain Description: PRK08026 Location: 2935910-2937773 bp Feature: domain Description: PRK08026 Location: 293591 0-2937773 bp Feature: gene Location: 3310391-3310870 bp Ori: ARD52801.1 Feature: domain Description: PHA02517 Location: 3310451-3310805 bp Feature: domain Description: PHA0251 7 Location: 331 0451 -331 0805 bp Feature: gene Location: 3310797-3311168 bp Feature: gene Location: 3311477-3312985 bp Ori: ARD54401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3311735-3312467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 1 735-331 2467 bp Feature: domain Description: GIIM Note: maturase Location: 3312542-3312740 bp Feature: domain Description: GIIM Note: maturase Location: 331 2542-331 2740 bp Feature: gene Location: 3313162-3313548 bp Ori: ARD52803.1 Feature: domain Description: PHA02517 Location: 3313165-3313546 bp Feature: domain Description: PHA0251 7 Location: 331 31 65-331 3546 bp Feature: gene Location: 3313667-3314059 bp Ori: ARD52804.1 Feature: domain Description: TIGR00156 Location: 3313673-3314048 bp Feature: domain Description: TIGR001 56 Location: 331 3673-331 4048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961), Collar (pfam07484), DUF1018 (pfam06252), Mor (pfam08765), PRK08026 (FliC/FljB family flagellin), TIGR00156 (TIGR00156 family protein)