myRT

myRT report for GCA_002080475.1_ASM208047v1

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Seq: CP020559.1 Clostridium formicaceticum strain DSM 92 chromosome, complete genome (4586728 bp)
Overview 1 RT 1: 1713076-1719365 bp 2 RT 2: 2020326-2025580 bp 3 RT 3: 2218119-2222300 bp 4 RT 4: 2290202-2300534 bp 5 RT 5: 2565674-2571461 bp 6 RT 6: 2822356-2834586 bp 7 RT 7: 2990586-2994262 bp 8 RT 8: 3021776-3026432 bp 9 RT 9: 3739695-3746593 bp 10 RT 10: 4475439-4482706 bp Neighborhood of RT #1 [1713076, 1719365] PRK06526 HTH_23 COG4584 RVT-GII GIIM RVT-GII GIIM Calci_bind_CcbP Neighborhood of RT #2 [2020326, 2025591] LysM LysM LysM RtcB RtcB RVT-GII Intron_maturas2 HNHc RtcB Peptidase_M56 Neighborhood of RT #3 [2218119, 2222764] Amidase_2 Glucosaminidase SPOR XhlA RVT-DGRs Avd_like FGE-sulfatase Neighborhood of RT #4 [2290202, 2300548] RNase_Y recA RVT-GII Intron_maturas2 HNHc recA RVT_N RVT-GII GIIM HNHc tigrfam_recA Neighborhood of RT #5 [2565674, 2571461] BaeS ProX_deacylase RVT-GII GIIM ManC Neighborhood of RT #6 [2822356, 2834597] COG2361 COG1669 RVT-GII Creatininase LUD_dom RVT-GII Asp_protease_2 PTZ00330 RVT-GII GIIM integrase_gron integrase_gron Neighborhood of RT #7 [2990586, 2994262] Acetyltransf_1 RVT-GII DUF2992 Neighborhood of RT #8 [3021776, 3026785] Cation_efflux Y1_Tnp RVT-Retrons PRTase_2 Neighborhood of RT #9 [3739695, 3746667] dnaE McrA RVT-GII dnaE DUF1638 Neighborhood of RT #10 [4475439, 4482768] RVT-UG3 RVT-UG8 SPOUT_MTase InsQ Feature: gene Location: 1713076-1713837 bp Ori: ARE87150.1 Feature: domain Description: PRK06526 Location: 1713103-1713811 bp Feature: domain Description: PRK06526 Location: 1 71 31 03-1 71 381 1 bp Feature: gene Location: 1713834-1715417 bp Ori: ARE87151.1 Feature: domain Description: HTH_23 Location: 1713843-1713966 bp Feature: domain Description: HTH_23 Location: 1 71 3843-1 71 3966 bp Feature: domain Description: COG4584 Location: 1714170-1714704 bp Feature: domain Description: COG4584 Location: 1 71 41 70-1 71 4704 bp Feature: gene Location: 1715600-1716541 bp Ori: ARE87152.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1715606-1716170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 5606-1 71 61 70 bp Feature: domain Description: GIIM Note: maturase Location: 1716251-1716470 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 6251 -1 71 6470 bp Feature: gene Location: 1717130-1718440 bp Ori: ARE87153.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1717430-1718069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 7430-1 71 8069 bp Feature: domain Description: GIIM Note: maturase Location: 1718150-1718369 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 81 50-1 71 8369 bp Feature: gene Location: 1718645-1718998 bp Ori: ARE87154.1 Feature: domain Description: Calci_bind_CcbP Location: 1718729-1718987 bp Feature: domain Description: Calci_bind_CcbP Location: 1 71 8729-1 71 8987 bp Feature: gene Location: 1719231-1719365 bp Feature: gene Location: 2020326-2020853 bp Ori: ARE87503.1 Feature: domain Description: LysM Location: 2020356-2020485 bp Feature: domain Description: LysM Location: 2020356-2020485 bp Feature: domain Description: LysM Location: 2020533-2020659 bp Feature: domain Description: LysM Location: 2020533-2020659 bp Feature: domain Description: LysM Location: 2020731-2020845 bp Feature: domain Description: LysM Location: 2020731 -2020845 bp Feature: gene Location: 2021202-2021675 bp Ori: ARE87504.1 Gene: rtcB_2 Feature: domain Description: RtcB Location: 2021319-2021529 bp Feature: domain Description: RtcB Location: 2021 31 9-2021 529 bp Feature: domain Description: RtcB Location: 2021547-2021643 bp Feature: domain Description: RtcB Location: 2021 547-2021 643 bp Feature: gene Location: 2022235-2024046 bp Ori: ARE87505.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2022499-2023330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2022499-2023330 bp Feature: domain Description: Intron_maturas2 Location: 2023507-2023747 bp Feature: domain Description: Intron_maturas2 Location: 2023507-2023747 bp Feature: domain Description: HNHc Note: nucleases Location: 2023879-2024023 bp Feature: domain Description: HNHc Note: nucleases Location: 2023879-2024023 bp Feature: gene Location: 2024161-2024901 bp Ori: ARE87506.1 Gene: rtcB_3 Feature: domain Description: RtcB Location: 2024176-2024887 bp Feature: domain Description: RtcB Location: 20241 76-2024887 bp Feature: gene Location: 2025358-2025591 bp Ori: ARE87507.1 Feature: domain Description: Peptidase_M56 Location: 2025388-2025580 bp Feature: domain Description: Peptidase_M56 Location: 2025388-2025580 bp Feature: gene Location: 2218119-2219597 bp Ori: ARE87697.1 Gene: cwlC_2 Feature: domain Description: Amidase_2 Location: 2218185-2218569 bp Feature: domain Description: Amidase_2 Location: 221 81 85-221 8569 bp Feature: domain Description: Glucosaminidase Location: 2218746-2219133 bp Feature: domain Description: Glucosaminidase Location: 221 8746-221 91 33 bp Feature: domain Description: SPOR Location: 2219160-2219361 bp Feature: domain Description: SPOR Location: 221 91 60-221 9361 bp Feature: gene Location: 2219612-2219857 bp Ori: ARE87698.1 Feature: domain Description: XhlA Location: 2219651-2219846 bp Feature: domain Description: XhlA Location: 221 9651 -221 9846 bp Feature: gene Location: 2219923-2221008 bp Ori: ARE87699.1 Gene: ltrA_4 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2220133-2220793 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22201 33-2220793 bp Feature: gene Location: 2221322-2221663 bp Ori: ARE87700.1 Feature: domain Description: Avd_like Location: 2221343-2221655 bp Feature: domain Description: Avd_like Location: 2221 343-2221 655 bp Feature: gene Location: 2221736-2222764 bp Ori: ARE87701.1 Feature: domain Description: FGE-sulfatase Location: 2221982-2222300 bp Feature: domain Description: FGE-sulfatase Location: 2221 982-2222300 bp Feature: gene Location: 2290202-2291569 bp Ori: ARE87792.1 Gene: rny Feature: domain Description: RNase_Y Location: 2290205-2291567 bp Feature: domain Description: RNase_Y Location: 2290205-2291 567 bp Feature: gene Location: 2292320-2292820 bp Ori: ARE87793.1 Feature: domain Description: recA Location: 2292404-2292794 bp Feature: domain Description: recA Location: 2292404-2292794 bp Feature: gene Location: 2292874-2294904 bp Ori: ARE87794.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293138-2294125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22931 38-22941 25 bp Feature: domain Description: Intron_maturas2 Location: 2294206-2294503 bp Feature: domain Description: Intron_maturas2 Location: 2294206-2294503 bp Feature: domain Description: HNHc Note: nucleases Location: 2294698-2294821 bp Feature: domain Description: HNHc Note: nucleases Location: 2294698-2294821 bp Feature: gene Location: 2295570-2295797 bp Ori: ARE87795.1 Feature: domain Description: recA Location: 2295573-2295780 bp Feature: domain Description: recA Location: 2295573-2295780 bp Feature: gene Location: 2295983-2296084 bp Feature: gene Location: 2296105-2297874 bp Ori: ARE87797.1 Gene: ltrA_6 Feature: domain Description: RVT_N Location: 2296153-2296396 bp Feature: domain Description: RVT_N Location: 22961 53-2296396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296453-2297110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296453-22971 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 2297173-2297407 bp Feature: domain Description: GIIM Note: maturase Location: 22971 73-2297407 bp Feature: domain Description: HNHc Note: nucleases Location: 2297608-2297770 bp Feature: domain Description: HNHc Note: nucleases Location: 2297608-2297770 bp Feature: gene Location: 2299141-2299335 bp Feature: gene Location: 2300246-2300548 bp Ori: ARE87799.1 Feature: domain Description: tigrfam_recA Location: 2300255-2300534 bp Feature: domain Description: tigrfam_recA Location: 2300255-2300534 bp Feature: gene Location: 2565674-2566459 bp Ori: ARE88072.1 Gene: todS_2 Feature: domain Description: BaeS Location: 2565680-2566379 bp Feature: domain Description: BaeS Location: 2565680-2566379 bp Feature: gene Location: 2566809-2567282 bp Ori: ARE88073.1 Feature: domain Description: ProX_deacylase Location: 2566821-2567262 bp Feature: domain Description: ProX_deacylase Location: 2566821 -2567262 bp Feature: gene Location: 2567526-2568836 bp Ori: ARE88074.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2567826-2568465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2567826-2568465 bp Feature: domain Description: GIIM Note: maturase Location: 2568546-2568765 bp Feature: domain Description: GIIM Note: maturase Location: 2568546-2568765 bp Feature: gene Location: 2569462-2569905 bp Ori: ARE88075.1 Feature: domain Description: ManC Location: 2569534-2569885 bp Feature: domain Description: ManC Location: 2569534-2569885 bp Feature: gene Location: 2570079-2571461 bp Feature: gene Location: 2822356-2822535 bp Ori: ARE88309.1 Feature: domain Description: COG2361 Location: 2822362-2822482 bp Feature: domain Description: COG2361 Location: 2822362-2822482 bp Feature: gene Location: 2822532-2822822 bp Ori: ARE88310.1 Feature: domain Description: COG1669 Location: 2822535-2822820 bp Feature: domain Description: COG1 669 Location: 2822535-2822820 bp Feature: gene Location: 2823030-2824358 bp Ori: ARE88311.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2823336-2824005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2823336-2824005 bp Feature: gene Location: 2824981-2825805 bp Ori: ARE88312.1 Gene: crnA Feature: domain Description: Creatininase Location: 2825017-2825785 bp Feature: domain Description: Creatininase Location: 282501 7-2825785 bp Feature: gene Location: 2826154-2826795 bp Ori: ARE88313.1 Feature: domain Description: LUD_dom Location: 2826193-2826775 bp Feature: domain Description: LUD_dom Location: 28261 93-2826775 bp Feature: gene Location: 2827330-2828370 bp Ori: ARE88314.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2827636-2828305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2827636-2828305 bp Feature: gene Location: 2829057-2829446 bp Ori: ARE88315.1 Feature: domain Description: Asp_protease_2 Location: 2829129-2829375 bp Feature: domain Description: Asp_protease_2 Location: 28291 29-2829375 bp Feature: gene Location: 2829448-2829690 bp Feature: gene Location: 2830026-2830466 bp Ori: ARE88317.1 Feature: domain Description: PTZ00330 Location: 2830032-2830440 bp Feature: domain Description: PTZ00330 Location: 2830032-2830440 bp Feature: gene Location: 2830706-2832052 bp Ori: ARE88318.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2831012-2831681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2831 01 2-2831 681 bp Feature: domain Description: GIIM Note: maturase Location: 2831759-2831966 bp Feature: domain Description: GIIM Note: maturase Location: 2831 759-2831 966 bp Feature: gene Location: 2832802-2833326 bp Feature: gene Location: 2833578-2834597 bp Ori: ARE88320.1 Gene: xerD_4 Feature: domain Description: integrase_gron Location: 2833776-2834295 bp Feature: domain Description: integrase_gron Location: 2833776-2834295 bp Feature: domain Description: integrase_gron Location: 2834349-2834586 bp Feature: domain Description: integrase_gron Location: 2834349-2834586 bp Feature: gene Location: 2990586-2991101 bp Ori: ARE88464.1 Gene: mshD Feature: domain Description: Acetyltransf_1 Location: 2990700-2991006 bp Feature: domain Description: Acetyltransf_1 Location: 2990700-2991 006 bp Feature: gene Location: 2991280-2991513 bp Feature: gene Location: 2991585-2992625 bp Ori: ARE88466.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2991891-2992560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2991 891 -2992560 bp Feature: gene Location: 2993212-2993640 bp Ori: ARE88467.1 Feature: domain Description: DUF2992 Location: 2993242-2993638 bp Feature: domain Description: DUF2992 Location: 2993242-2993638 bp Feature: gene Location: 2993831-2994262 bp Feature: gene Location: 3021776-3022804 bp Ori: ARE88496.1 Feature: domain Description: Cation_efflux Location: 3021887-3022514 bp Feature: domain Description: Cation_efflux Location: 3021 887-302251 4 bp Feature: gene Location: 3023072-3023812 bp Ori: ARE88497.1 Feature: domain Description: Y1_Tnp Location: 3023114-3023441 bp Feature: domain Description: Y1 _Tnp Location: 30231 1 4-3023441 bp Feature: gene Location: 3024215-3025234 bp Ori: ARE88498.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3024431-3024992 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3024431 -3024992 bp Feature: gene Location: 3025500-3025844 bp Feature: gene Location: 3025847-3026785 bp Ori: ARE88500.1 Feature: domain Description: PRTase_2 Location: 3026231-3026432 bp Feature: domain Description: PRTase_2 Location: 3026231 -3026432 bp Feature: gene Location: 3739695-3740816 bp Ori: ARE89144.1 Gene: dnaE_1 Feature: domain Description: dnaE Location: 3739698-3740814 bp Feature: domain Description: dnaE Location: 3739698-374081 4 bp Feature: gene Location: 3741050-3741745 bp Ori: ARE89145.1 Feature: domain Description: McrA Location: 3741476-3741728 bp Feature: domain Description: McrA Location: 3741 476-3741 728 bp Feature: gene Location: 3742056-3742505 bp Ori: ARE89146.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742359-3742494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742359-3742494 bp Feature: gene Location: 3743196-3745511 bp Ori: ARE89147.1 Gene: dnaE_2 Feature: domain Description: dnaE Location: 3743229-3745497 bp Feature: domain Description: dnaE Location: 3743229-3745497 bp Feature: gene Location: 3746011-3746667 bp Ori: ARE89148.1 Feature: domain Description: DUF1638 Location: 3746101-3746593 bp Feature: domain Description: DUF1 638 Location: 37461 01 -3746593 bp Feature: gene Location: 4475439-4475777 bp Feature: gene Location: 4476110-4477663 bp Feature: gene Location: 4477855-4479159 bp Ori: ARE89770.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4478155-4478626 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 44781 55-4478626 bp Feature: gene Location: 4479394-4481343 bp Ori: ARE89771.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4479904-4480348 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4479904-4480348 bp Feature: gene Location: 4481714-4482289 bp Ori: ARE89772.1 Gene: rlmH Feature: domain Description: SPOUT_MTase Location: 4481816-4482284 bp Feature: domain Description: SPOUT_MTase Location: 4481 81 6-4482284 bp Feature: gene Location: 4482286-4482768 bp Ori: ARE89773.1 Feature: domain Description: InsQ Location: 4482304-4482706 bp Feature: domain Description: InsQ Location: 4482304-4482706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), HTH_23 (pfam13384), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), Calci_bind_CcbP (pfam11535), LysM (smart00257), RtcB (pfam01139), Intron_maturas2 (pfam01348), HNHc (smart00507)
Peptidase_M56 (pfam05569), Amidase_2 (pfam01510), Glucosaminidase (pfam01832), SPOR (pfam05036), XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781), RNase_Y (TIGR03319), recA (PRK09519)
RVT_N (pfam13655), tigrfam_recA (TIGR02012), BaeS (COG0642), ProX_deacylase (cd04333), ManC (COG0662), COG2361 (Uncharacterized conserved protein, contains HEPN domain ), COG1669 (Predicted nucleotidyltransferase ), Creatininase (pfam02633), LUD_dom (pfam02589), Asp_protease_2 (pfam13650)
PTZ00330 (acetyltransferase; Provisional), integrase_gron (TIGR02249), Acetyltransf_1 (pfam00583), DUF2992 (pfam11208), Cation_efflux (pfam01545), Y1_Tnp (pfam01797), RVT-Retrons, PRTase_2 (pfam15609), dnaE (PRK07374), McrA (COG4058)
DUF1638 (pfam07796), RVT-UG3, RVT-UG8, SPOUT_MTase (pfam02590), InsQ (COG0675)