myRT

myRT report for GCA_002081995.1_ASM208199v1

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Seq: CP015108.1 Sporosarcina ureae strain S204, complete genome (3362333 bp)
Overview 1 RT 1: 65939-71776 bp 2 RT 2: 74810-81628 bp 3 RT 3: 399794-406124 bp 4 RT 4: 1157087-1164324 bp Neighborhood of RT #1 [65939, 72454] IspA dxs RVT-GII dxs YqxC Neighborhood of RT #2 [74810, 81669] spore_IV_B spore_0_A RVT-GII spore_0_A FapA Neighborhood of RT #3 [399794, 406252] PRK02304 recJ ssDNA-exonuc_C RVT-GII recJ YrvD Neighborhood of RT #4 [1157087, 1164389] PotE RVT-GII PRK07525 HTH_1 PBP2_CysL_like Feature: gene Location: 65939-66823 bp Ori: ARF12763.1 Feature: domain Description: IspA Location: 65954-66803 bp Feature: domain Description: IspA Location: 65954-66803 bp Feature: gene Location: 66965-68308 bp Feature: domain Description: dxs Location: 66974-68309 bp Feature: domain Description: dxs Location: 66974-68309 bp Feature: gene Location: 69027-70916 bp Ori: ARF12764.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69357-70098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69357-70098 bp Feature: gene Location: 71105-71635 bp Ori: ARF12765.1 Feature: domain Description: dxs Location: 71108-71591 bp Feature: domain Description: dxs Location: 71 1 08-71 591 bp Feature: gene Location: 71644-72454 bp Feature: domain Description: YqxC Location: 71653-71776 bp Feature: domain Description: YqxC Location: 71 653-71 776 bp Feature: gene Location: 74810-75763 bp Ori: ARF12768.1 Feature: domain Description: spore_IV_B Location: 74891-75749 bp Feature: domain Description: spore_IV_B Location: 74891 -75749 bp Feature: gene Location: 75990-76265 bp Ori: ARF12769.1 Feature: domain Description: spore_0_A Location: 75999-76248 bp Feature: domain Description: spore_0_A Location: 75999-76248 bp Feature: gene Location: 76963-78852 bp Ori: ARF12770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77293-78034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77293-78034 bp Feature: gene Location: 79017-79556 bp Feature: domain Description: spore_0_A Location: 79020-79554 bp Feature: domain Description: spore_0_A Location: 79020-79554 bp Feature: gene Location: 80116-81669 bp Ori: ARF12771.1 Feature: domain Description: FapA Location: 80323-81628 bp Feature: domain Description: FapA Location: 80323-81 628 bp Feature: gene Location: 399794-400306 bp Ori: ARF13055.1 Feature: domain Description: PRK02304 Location: 399800-400304 bp Feature: domain Description: PRK02304 Location: 399800-400304 bp Feature: gene Location: 400297-402300 bp Ori: ARF15624.1 Feature: domain Description: recJ Location: 400300-401641 bp Feature: domain Description: recJ Location: 400300-401 641 bp Feature: domain Description: ssDNA-exonuc_C Location: 401659-402250 bp Feature: domain Description: ssDNA-exonuc_C Location: 401 659-402250 bp Feature: gene Location: 402533-404422 bp Ori: ARF13056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402863-403604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402863-403604 bp Feature: gene Location: 405124-405414 bp Ori: ARF13057.1 Feature: domain Description: recJ Location: 405208-405397 bp Feature: domain Description: recJ Location: 405208-405397 bp Feature: gene Location: 405893-406252 bp Ori: ARF13058.1 Feature: domain Description: YrvD Location: 405896-406124 bp Feature: domain Description: YrvD Location: 405896-4061 24 bp Feature: gene Location: 1157087-1157281 bp Feature: gene Location: 1158057-1159487 bp Feature: domain Description: PotE Location: 1158066-1159431 bp Feature: domain Description: PotE Location: 1 1 58066-1 1 59431 bp Feature: gene Location: 1159751-1161002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160279-1160555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 60279-1 1 60555 bp Feature: gene Location: 1161625-1163400 bp Ori: ARF13709.1 Feature: domain Description: PRK07525 Location: 1161670-1163377 bp Feature: domain Description: PRK07525 Location: 1 1 61 670-1 1 63377 bp Feature: gene Location: 1163451-1164389 bp Ori: ARF13710.1 Feature: domain Description: HTH_1 Location: 1163463-1163625 bp Feature: domain Description: HTH_1 Location: 1 1 63463-1 1 63625 bp Feature: domain Description: PBP2_CysL_like Location: 1163730-1164324 bp Feature: domain Description: PBP2_CysL_like Location: 1 1 63730-1 1 64324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IspA (pfam04279), dxs (TIGR00204), RVT-GII, YqxC (COG1189), spore_IV_B (TIGR02860), spore_0_A (TIGR02875), FapA (pfam03961), PRK02304 (adenine phosphoribosyltransferase; Provisional), recJ (TIGR00644), ssDNA-exonuc_C (pfam10141)
YrvD (COG5416), PotE (COG0531), PRK07525 (sulfoacetaldehyde acetyltransferase; Validated), HTH_1 (pfam00126), PBP2_CysL_like (cd08420)