myRT

myRT report for GCA_002082215.1_ASM208221v1

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Seq: CP017587.1 Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ06, complete sequence (47481 bp)
Overview 1 RT 1: 31003-34668 bp Neighborhood of RT #1 [31003, 34668] Pentapeptide RVT-GII GIIM Feature: gene Location: 31003-31212 bp Feature: gene Location: 31580-32557 bp Ori: ARF52163.1 Feature: domain Description: Pentapeptide Location: 32297-32411 bp Feature: domain Description: Pentapeptide Location: 32297-3241 1 bp Feature: gene Location: 32771-33988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33104-33716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 04-3371 6 bp Feature: domain Description: GIIM Note: maturase Location: 33776-33962 bp Feature: domain Description: GIIM Note: maturase Location: 33776-33962 bp Feature: gene Location: 34049-34378 bp Feature: gene Location: 34414-34668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), RVT-GII, GIIM (pfam08388)

Seq: CP017581.1 Pantoea stewartii subsp. stewartii DC283, complete genome (4528215 bp)
Overview 1 RT 1: 1186662-1192954 bp 2 RT 2: 3322259-3327561 bp 3 RT 3: 3919925-3924437 bp Neighborhood of RT #1 [1186662, 1194325] Acetyltransf_8 RhbC RVT-GII GIIM PRK15402 PRK10044 Neighborhood of RT #2 [3322259, 3327566] FepC FepD RVT-GII GIIM PRK10836 Neighborhood of RT #3 [3919925, 3924442] TLP_HIUase PRK15061 RVT-GII GIIM cat_per_HPI Feature: gene Location: 1186662-1189013 bp Ori: ARF48903.1 Feature: domain Description: Acetyltransf_8 Location: 1186731-1187157 bp Feature: domain Description: Acetyltransf_8 Location: 1186731-1187157 bp Feature: domain Description: RhbC Location: 1187262-1189005 bp Feature: domain Description: RhbC Location: 11872 62 -1189005 bp Feature: gene Location: 1189073-1189402 bp Feature: gene Location: 1189463-1190830 bp Ori: ARF48905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189796-1190408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189796-1190408 bp Feature: domain Description: GIIM Note: maturase Location: 1190468-1190678 bp Feature: domain Description: GIIM Note: maturase Location: 1190468-1190678 bp Feature: gene Location: 1190939-1192171 bp Ori: ARF48906.1 Feature: domain Description: PRK15402 Location: 1190954-1192157 bp Feature: domain Description: PRK15402 Location: 1190954-1192 157 bp Feature: gene Location: 1192210-1194325 bp Feature: domain Description: PRK10044 Location: 1192258-1192954 bp Feature: domain Description: PRK10044 Location: 1192 2 58-1192 954 bp Feature: gene Location: 3322259-3323047 bp Ori: ARF50751.1 Feature: domain Description: FepC Location: 3322274-3323012 bp Feature: domain Description: FepC Location: 332 2 2 74-332 3012 bp Feature: gene Location: 3323047-3324123 bp Ori: ARF50752.1 Feature: domain Description: FepD Location: 3323134-3324115 bp Feature: domain Description: FepD Location: 332 3134-332 4115 bp Feature: gene Location: 3324309-3325676 bp Ori: ARF50753.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324642-3325254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 4642 -332 52 54 bp Feature: domain Description: GIIM Note: maturase Location: 3325314-3325524 bp Feature: domain Description: GIIM Note: maturase Location: 332 5314-332 552 4 bp Feature: gene Location: 3325737-3326066 bp Feature: gene Location: 3326106-3327566 bp Ori: ARF50755.1 Feature: domain Description: PRK10836 Location: 3326109-3327561 bp Feature: domain Description: PRK10836 Location: 332 6109-332 7561 bp Feature: gene Location: 3919925-3920260 bp Ori: ARF51293.1 Feature: domain Description: TLP_HIUase Location: 3919934-3920258 bp Feature: domain Description: TLP_HIUase Location: 3919934-392 02 58 bp Feature: gene Location: 3920398-3920871 bp Ori: ARF51294.1 Feature: domain Description: PRK15061 Location: 3920440-3920866 bp Feature: domain Description: PRK15061 Location: 392 0440-392 0866 bp Feature: gene Location: 3920950-3922317 bp Ori: ARF51295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3921283-3921895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 12 83-392 1895 bp Feature: domain Description: GIIM Note: maturase Location: 3921955-3922165 bp Feature: domain Description: GIIM Note: maturase Location: 392 1955-392 2 165 bp Feature: gene Location: 3922378-3922707 bp Feature: gene Location: 3922709-3924442 bp Feature: domain Description: cat_per_HPI Location: 3922712-3924437 bp Feature: domain Description: cat_per_HPI Location: 392 2 712 -392 4437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_8 (pfam13523), RhbC (COG4264), RVT-GII, GIIM (pfam08388), PRK15402 (MdfA family multidrug efflux MFS transporter), PRK10044 (ferrichrome outer membrane transporter; Provisional), FepC (COG1120), FepD (COG0609), PRK10836 (lysine transporter; Provisional), TLP_HIUase (cd05822)
PRK15061 (catalase/peroxidase), cat_per_HPI (TIGR00198)

Seq: CP017590.1 Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ09, complete sequence (132938 bp)
Overview 1 RT 1: 7875-11396 bp Neighborhood of RT #1 [7875, 11396] TnpB_IS66 HTH_23 InsE RVT-GII GIIM Feature: gene Location: 7875-8222 bp Ori: ARF52366.1 Feature: domain Description: TnpB_IS66 Location: 7902-8193 bp Feature: domain Description: TnpB_IS66 Location: 7902-8193 bp Feature: gene Location: 8219-8848 bp Ori: ARF52367.1 Feature: domain Description: HTH_23 Location: 8246-8360 bp Feature: domain Description: HTH_23 Location: 8246-83 60 bp Feature: domain Description: InsE Location: 8489-8825 bp Feature: domain Description: InsE Location: 8489-8825 bp Feature: gene Location: 9124-10491 bp Ori: ARF52368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9457-10069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9457-10069 bp Feature: domain Description: GIIM Note: maturase Location: 10129-10339 bp Feature: domain Description: GIIM Note: maturase Location: 10129-103 3 9 bp Feature: gene Location: 10552-10881 bp Feature: gene Location: 10929-11396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: CP017588.1 Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ07, complete sequence (65483 bp)
Overview 1 RT 1: 53627-59224 bp Neighborhood of RT #1 [53627, 59238] PinE Rhs_assc_core RVT-GII DDE_Tnp_Tn3 Tra_M Feature: gene Location: 53627-54202 bp Ori: ARF52237.1 Feature: domain Description: PinE Location: 53630-54173 bp Feature: domain Description: PinE Location: 53630-54 173 bp Feature: gene Location: 54558-55811 bp Ori: ARF52238.1 Feature: domain Description: Rhs_assc_core Location: 54726-54951 bp Feature: domain Description: Rhs_assc_core Location: 54 726-54 951 bp Feature: gene Location: 55877-56443 bp Ori: ARF52239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56198-56390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56198-56390 bp Feature: gene Location: 56876-57790 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 56894-57710 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 56894 -57710 bp Feature: gene Location: 58825-59238 bp Ori: ARF52240.1 Feature: domain Description: Tra_M Location: 58828-59224 bp Feature: domain Description: Tra_M Location: 58828-59224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Rhs_assc_core (TIGR03696), RVT-GII, DDE_Tnp_Tn3 (pfam01526), Tra_M (pfam05261)